- Clone 'cicl054p07' >
- Transcript 'Harore.CG.MTP2014.S7...' >
- Clone 'cicl029j05' >
- Molecular Tool 'FoxA-a-MO (Lemaire Lab)' >
- Transcript 'KH2012:KH.L170.28.v5...'
Transcript Model
Transcript Id
KH2012:KH.L170.28.v5.A.nonSL23-2
Possible name(s)
STRBP; ZFR; ZFR2
Gene model
Location
KhL170 [100,847 / 107,491]
Amino acid sequence
Length: 772
>KH.L170.28.v5.A.nonSL23-2
VIPYKMAANYFGFTSGGNNQQYNIGTTGNYGGNYGIQQQQQPAQNNYMQPPRAIQPPQQQ
TYVAYGHPTASGGASVPSTSYPNTYSYQSQQQQQQQQQTGFNKPAVQQSNQHQYYQQQQQ
PRNPPTQTNTANSSTAYFTNNNTQNSAMQIKQPAPQPVYNQPSPPVTSNFNQRQSQQSQQ
NISNYEKALINAASSIYQQHSTPTGVTGGGGASNLSAAYIKQLPYWKQKRLQQVKDPNKP
IVATEVKAYLYAWLSKKKARPDYNITAHGSHPYRQTYVCEIVVHGYDYVAKGSAGNKKDS
QTRAAWDFCDYLVREKLMTESELPIRDAKFAATNNKMPASYKPQSYQETKVGIAMKKALS
NKVNFVGGNTLHLSGGVNTVIKSTPTAYPPITSTSTPTFKAPTPANVPLMPPPPAPPVMK
PICQETIKEEIKDSAEIESKNAPVGEDYVTQVWTDGRVIRYRCKLCECEFNDPSAKALHI
RGRRHRLSYKKKVDPNIEVEVKLNPKQKSLMEMKMRMEAKKEAAMEQQKKRMEWQMEMRK
REEEDIRLYEQELYYRYKEELSLFEEEVSYCRLSGTPVPPYLAPPNKPHLKFFRPNDANG
NEGQLSRDDQLIMKKHKNIYPTPEELEAVQSTVQTVETAFKDVSRTIHEQEMKVFAASHG
TRKRAQPQRLITAVVRVGELSKGLLLTGDLHVALVLMCNVKPTKTMLNRVAGHLPKQLGN
VSDENFVMKIMVEDAAILLATKSVPVVTIRITLTSTSMRNPCPDAGMVPKKK
Nucleotide sequence
Length: 2,516
>KH2012:KH.L170.28.v5.A.nonSL23-2
GCGAAAATCATTGTTTCTGACTCTTTGAAACACGTTTTTATAGGTTATTCCTTACAAAAT
GGCCGCAAATTACTTCGGATTCACTTCAGGAGGGAACAATCAACAATATAACATTGGTAC
CACTGGAAACTACGGTGGTAATTATGGAATACAACAGCAGCAGCAACCAGCACAAAATAA
CTATATGCAACCACCAAGAGCCATCCAGCCACCACAACAACAAACATACGTAGCTTATGG
ACACCCAACTGCATCTGGAGGAGCATCTGTCCCATCTACATCTTATCCCAACACATACAG
TTATCAAAGTCAACAACAGCAACAACAACAACAACAAACTGGATTCAACAAGCCAGCTGT
TCAACAAAGCAATCAACATCAATATTATCAACAACAACAACAACCAAGAAACCCACCCAC
ACAAACCAACACTGCCAATTCATCAACTGCCTATTTCACAAACAACAATACTCAAAATAG
CGCAATGCAGATTAAACAGCCAGCACCCCAGCCAGTGTATAACCAACCCAGCCCTCCTGT
TACATCTAATTTCAACCAACGACAGAGCCAACAATCACAACAAAACATATCTAACTATGA
GAAAGCTCTCATCAACGCTGCTTCATCAATCTACCAACAACATTCAACACCAACTGGTGT
AACAGGGGGAGGGGGAGCATCTAATCTAAGTGCTGCCTATATAAAGCAACTACCTTACTG
GAAACAGAAGAGGTTACAGCAAGTCAAAGACCCCAACAAACCAATTGTAGCAACTGAAGT
CAAAGCATATCTCTATGCTTGGTTAAGTAAGAAGAAAGCTCGTCCCGATTACAACATTAC
TGCACATGGTAGTCACCCGTACAGGCAAACCTATGTGTGCGAGATCGTTGTACACGGATA
TGATTATGTAGCCAAGGGAAGCGCTGGAAACAAGAAAGATTCGCAAACAAGGGCCGCGTG
GGATTTCTGTGACTACCTGGTTCGTGAGAAACTAATGACAGAATCTGAACTTCCAATTAG
AGATGCCAAGTTTGCGGCAACCAACAACAAGATGCCAGCTTCATATAAACCACAAAGTTA
CCAGGAAACCAAAGTAGGCATCGCAATGAAGAAAGCTCTATCTAATAAAGTCAACTTTGT
TGGTGGTAATACTCTTCATTTATCCGGAGGGGTAAATACAGTTATTAAAAGCACCCCCAC
TGCCTACCCACCCATCACCAGCACCTCTACCCCTACCTTCAAAGCCCCCACCCCCGCAAA
TGTACCCCTAATGCCCCCGCCCCCTGCCCCGCCTGTCATGAAACCCATATGCCAGGAAAC
AATCAAAGAAGAAATCAAAGATTCTGCAGAAATAGAAAGTAAAAATGCTCCAGTAGGGGA
GGATTATGTAACACAAGTATGGACGGACGGTCGGGTTATAAGGTATCGGTGTAAATTATG
TGAATGTGAGTTTAATGATCCGTCTGCAAAAGCTCTTCATATAAGAGGAAGAAGGCACAG
GCTTTCTTATAAGAAAAAAGTTGATCCAAATATAGAAGTTGAAGTGAAACTGAATCCTAA
ACAAAAAAGCTTGATGGAAATGAAAATGAGAATGGAAGCAAAAAAAGAGGCAGCGATGGA
GCAACAGAAGAAGAGGATGGAATGGCAGATGGAGATGAGGAAGCGGGAGGAAGAAGACAT
CAGGCTTTATGAGCAAGAGCTTTACTATCGATACAAGGAAGAACTGTCTTTATTTGAAGA
AGAAGTTTCATATTGTCGTTTATCTGGCACCCCTGTCCCCCCATACCTTGCACCACCGAA
TAAACCACATTTGAAATTTTTTCGGCCAAATGATGCAAATGGGAATGAGGGTCAGCTTTC
ACGGGATGACCAGCTTATCATGAAGAAGCATAAGAACATTTACCCAACACCAGAAGAACT
GGAGGCAGTACAAAGTACTGTGCAGACGGTAGAAACTGCCTTCAAGGATGTGTCGCGTAC
AATTCATGAACAAGAGATGAAAGTATTTGCTGCCTCACACGGAACTCGTAAAAGAGCGCA
ACCTCAGCGATTGATCACTGCTGTTGTAAGAGTCGGTGAACTTTCTAAAGGTTTACTACT
CACTGGTGACCTGCATGTAGCATTGGTCCTTATGTGCAATGTCAAACCAACCAAAACAAT
GTTGAACAGGGTGGCTGGTCATCTACCCAAGCAACTAGGGAATGTAAGTGATGAAAACTT
TGTGATGAAAATCATGGTTGAAGACGCTGCTATTCTCCTTGCTACCAAATCTGTCCCAGT
GGTCACCATTCGCATCACTCTTACATCCACATCAATGAGAAACCCATGTCCGGATGCAGG
TATGGTCCCTAAGAAAAAATAAAAATATATTTTTAAACGCAAGCAGATTTTTTATAAGGA
ATTACAGTCATTTTTAAAAGAAAAATCTACTTTTTTTGAGTTGTTATAATTTATTTTTAT
CCGGTATAGATTTCGTATCTTAGCTTTAAGGGTTTGCATAAGGAGGTTTTATAATA
| ProSiteProfiles |
dsRBD_dom (IPR014720) - T[245-314] 12.718 |
| SMART |
dsRBD_dom (IPR014720) - T[246-313] 6.4E-7 |
| Pfam |
dsRBD_dom (IPR014720) - T[250-312] 2.3E-7 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[443-492] 2.56E-6 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[463-485] . |
| ProSiteProfiles |
DZF_dom (IPR006561) - T[594-772] 29.801 |
| Pfam |
DZF_dom (IPR006561) - T[676-760] 6.8E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZFR2_HUMAN | 37.126 % | 194 | 7.15E-52 |
| STRBP_HUMAN | 39.157 % | 115 | 1.2E-26 |
| ZFR_HUMAN | 36.652 % | 228 | 6.94E-63 |