- Transcript 'KH2012:KH.L170.57.v1...'
Transcript Model
Transcript Id
KH2012:KH.L170.57.v1.B.ND1-1
Possible name(s)
PTPRQ; SDK1; USH2A
Gene model
Location
KhL170 [442 / 9,989]
Amino acid sequence
Length: 761
>KH.L170.57.v1.B.ND1-1
VTWQPPVEPNGNIIRYEVRRNGDLVSISDGRITRYHDFELTPGTQYSYVIVAYNSQGSVS
SDPPVSETTHQSAPAGLAPPTLTATSGRFMRADWSTPVNPNGVILNYTLFVRHVTRRTET
AYEFTANTFSFELGGLEPHEEYFFWLKTCTLLGCVMSERVMERTLEIPPANQNPPSVVLP
HRDQVPLDISWSPPVNTNGVIRFYKLYRRRLLDDESATEMLERRLAANVTGTSYTDLLPY
TRYRFQVTALNGAGETTSLWSAPMRSGEATPSGVPAPTFQDVSARSIQVVALDPERKNGI
IRGVSIYMKQNNSDDAMQLVSLEVYFKIWQQFSLVSLNPVTTYQIAIEMCTLDTLCVRGP
SAFVTTLSAPPSGQSVPIVDEVTTSNLSISWTEPAHLNGEISRYEILYRRGCQVTFPPVE
CHVSPTVVGYSGTSTQTVLRNLHPYTRYDFKVKSFNEYGSTESSWETVITRKSAPKYITH
FIVSSNSSYVKVAWPSTFDLNSVLTRFELSDRGRVIYAGLNTVYHYRRTGPSVHKFRLTV
YTDTGTTRSPVIIYNTRNNQPTTQIVENIGEDMTEIAAASVPFFQRTWFMVVMVIVAMLV
MSVVIGVVFRCMWGPRSSRSKIPNQREDIMMDLSAVPPYRSDDLSMHNYSVQSCPVKSPE
HPHGHINRSYSMDSLHRSTSHLMGQDISFDHSMFNPKDTVEYDDRWEHALPYDDDLEYVV
RSHDTDEPMNGKSDSGIHNYCEDEETPYKPKLAMKLKDTHL
Nucleotide sequence
Length: 3,414
>KH2012:KH.L170.57.v1.B.ND1-1
CATCACAAGATATGAAGTTCAGGCGCTCAGTGAGGATCTTTTCCAACCCATCAGTGTGCA
TCGGGTGCGTCGTCAGATAGAAGATCCAAATTCAGATGGAGAAGTTATTTTTGACGTGTT
AGATCCAGTGCATGATGTTTACAACTATACTGATGCAGGACTGCGGCCCTATTCAAGGTT
TCAGTACAAGATACGAACAAGTACTTCTATTGGGCATGTTGACAGCAGTTGGGTTGCCGT
GGAAACCCACCAAGCCCCACCGGAAGGAATTTCCCCTCCAGTTGTTGTTCCCCCAGCAGA
CAGAAGTCCAACAGCGCTTCAAGTCTCATGGAATCTACCAACTCAAGTCAATGGGGAGCT
ACAAACATTTAAAATGCAGCGAGGCAACAGCACGCCATTAAGTTTCCCACCAGATCAATT
CCAGTACAAAGATATCAACCTCAGGCCATATACGATGTATGAATACACAATATCTGCGTG
CACTGCTGGTGGTTGTTCAACCAGCGAAGTCACTCAGGCACGAACCTTTGAACAAGCACC
CCATTATGTAGCGCCACCAAGTGCTGTTGCATTTAATGCTACTTCTCTACAAACAACCTG
GCAAAGTCCTGGCACAGAAAACGGGAAGATAGTTTCCTACACACTGTATGGGGACGACAA
TGAAGTTATGTATCAAGGCAATAAAACAGAAGCATTGATAACGGGATTACTGCCATTTAG
GTAACATGGCAACCCCCTGTTGAACCCAATGGAAATATAATCAGATATGAAGTAAGAAGG
AACGGGGATCTTGTGTCTATAAGTGATGGGAGGATAACACGCTACCATGACTTTGAGCTT
ACCCCTGGCACTCAATACTCGTATGTGATCGTGGCTTATAACAGTCAAGGCAGCGTTAGT
AGTGACCCACCGGTGTCCGAGACAACCCACCAATCAGCACCTGCAGGTTTGGCCCCGCCC
ACTTTGACAGCGACCTCTGGAAGATTCATGCGTGCTGATTGGTCAACCCCTGTCAATCCC
AACGGAGTTATTTTAAATTACACTCTCTTCGTGCGTCATGTGACAAGGAGAACAGAAACG
GCCTACGAGTTCACAGCAAACACTTTCTCATTTGAACTGGGTGGATTGGAACCACACGAG
GAGTATTTCTTCTGGCTTAAAACTTGCACACTACTTGGTTGCGTAATGAGTGAACGAGTG
ATGGAACGAACACTAGAAATTCCACCTGCCAATCAAAATCCACCATCTGTGGTTCTACCA
CATAGAGATCAGGTTCCCCTTGACATTAGTTGGTCCCCACCAGTAAACACAAACGGAGTT
ATAAGATTTTACAAACTTTACCGGCGACGACTACTTGACGATGAATCTGCCACAGAAATG
TTGGAAAGAAGACTTGCAGCGAATGTGACGGGGACATCTTACACAGACTTGCTACCATAC
ACACGCTACCGGTTCCAGGTGACTGCTTTAAATGGGGCTGGGGAAACCACCAGTTTGTGG
TCTGCACCCATGCGCTCTGGGGAAGCCACACCTAGTGGGGTACCAGCCCCAACCTTCCAG
GATGTGTCAGCTAGATCCATCCAGGTGGTGGCGCTAGACCCAGAGAGAAAGAATGGAATT
ATTAGGGGAGTTTCAATTTATATGAAACAAAATAATTCAGATGATGCAATGCAATTGGTA
AGTCTTGAGGTTTACTTTAAGATATGGCAACAGTTTTCTCTGGTCAGTCTTAATCCAGTA
ACCACATACCAGATTGCGATAGAAATGTGCACATTGGACACATTATGTGTTCGAGGTCCT
TCAGCCTTTGTGACAACGCTCTCTGCTCCGCCAAGTGGCCAGTCAGTGCCAATTGTCGAT
GAAGTTACAACTTCCAACTTGAGCATTTCATGGACAGAACCTGCCCACTTGAATGGGGAA
ATAAGCAGGTATGAGATTTTATATCGTCGGGGATGTCAGGTCACATTTCCCCCTGTAGAG
TGCCATGTCTCTCCTACTGTTGTTGGGTATTCTGGCACGTCAACCCAAACAGTGTTGCGC
AATCTTCATCCTTACACTCGTTATGACTTTAAAGTGAAATCTTTCAACGAATACGGCAGC
ACTGAGTCGTCATGGGAAACCGTGATCACAAGGAAGTCCGCTCCGAAATACATCACCCAC
TTTATTGTGTCAAGCAACAGTAGTTATGTGAAAGTTGCTTGGCCTTCTACCTTCGATCTT
AACAGCGTGCTCACTCGTTTCGAACTATCGGATAGAGGTCGTGTAATCTATGCTGGGTTA
AACACGGTCTACCACTACAGACGTACTGGCCCTTCAGTCCATAAGTTTCGCTTAACAGTA
TACACTGATACTGGGACAACCAGATCCCCTGTAATCATATACAACACCAGGAACAATCAA
CCCACTACACAAATCGTGGAGAATATTGGTGAAGACATGACTGAAATTGCCGCTGCCAGC
GTTCCCTTCTTCCAGCGCACCTGGTTCATGGTTGTCATGGTGATAGTTGCCATGCTGGTG
ATGTCGGTCGTGATCGGCGTCGTGTTCCGTTGCATGTGGGGTCCGAGAAGCAGCCGCTCG
AAAATCCCAAACCAGCGCGAGGATATTATGATGGATTTAAGCGCCGTGCCGCCATACAGG
AGTGATGATCTTAGCATGCATAACTACAGTGTTCAGAGTTGTCCTGTCAAGTCACCTGAA
CACCCGCATGGTCACATCAACAGATCATACTCCATGGACTCCTTACATCGCAGTACAAGC
CACTTAATGGGACAAGACATCAGCTTTGATCATTCCATGTTCAATCCCAAGGACACAGTT
GAATATGATGACAGATGGGAGCACGCGCTGCCCTATGATGACGATCTCGAATACGTGGTG
AGGTCACATGACACAGATGAGCCAATGAACGGAAAGTCGGACAGCGGAATACATAACTAT
TGCGAGGATGAGGAAACTCCATACAAACCTAAGTTGGCGATGAAATTGAAAGACACACAC
TTATGACGTCACTATTCTTGAGAAGGATGCATAATTCCTAGGATTGTAACTTTTCCAGTC
ATAATATGGACTTATTGTTTAGTGTTGTAGTTTGCTAACCACACTCCAATGCTATTTGTG
TTACCCATTGCCAGATTAGAACTGTCTTTGTTCTATTTTAAAATACTGTTTTTTTTCTGT
TCTATTATTATATACAAACTGTTGTTACATTCCTTAGTTAAAAATCCTTTCTACTTTGCC
ATTTTTATAATGCCATGGTCTGTTTATAAGTGTTAACAACATTCTGCTATGAAGTTTAGG
AACTTTCCGTTTAATAATTGTATATTTACACTTACGCACCATTTTCCGTGTGGCCTTGAA
AAAATTTTGAAGCTGTAGCCTTACTGATTACAATTATGAATAAATAAATGAATG
| CDD |
FN3_dom (IPR003961) - T[1-69] 1.30034E-7 - T[80-153] 1.68189E-4 - T[187-263] 8.54707E-9 - T[377-470] 1.52827E-12 |
| Gene3D |
Ig-like_fold (IPR013783) - T[1-68] 1.4E-12 - T[69-169] 4.9E-11 - T[172-273] 1.6E-13 - T[274-380] 5.1E-5 - T[381-477] 3.5E-17 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[1-166] 2.07E-29 - T[186-371] 1.8E-24 - T[330-475] 7.38E-21 |
| PANTHER |
USH2A (IPR026915) - T[1-366] 3.8E-110 - T[364-495] 3.8E-110 - T[489-571] 3.8E-110 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[1-75] 14.635 - T[76-170] 15.819 - T[173-273] 18.012 - T[274-369] 9.641 - T[370-476] 17.72 |
| SMART |
FN3_dom (IPR003961) - T[74-155] 0.73 - T[168-256] 2.8E-4 - T[368-461] 2.0E-8 |
| Pfam |
FN3_dom (IPR003961) - T[80-150] 4.7E-6 - T[187-255] 3.2E-8 - T[379-462] 2.6E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| USH2A_HUMAN | 32.853 % | 354 | 5.51E-105 |
| PTPRQ_HUMAN | 25.587 % | 91.7 | 8.13E-19 |
| SDK1_HUMAN | 23.262 % | 95.5 | 6.42E-20 |