Aniseed - Transcript Card

Transcript 'KH2012:KH.L171.13.v2...'

Transcript Model

Transcript Id

KH2012:KH.L171.13.v2.B.SL2-2

Possible name(s)

OPN1LW; OPN1MW2; OPN1MW3

Gene model

KH2012:KH.L171.13

Location

KhL171 [206,541 / 207,370]

Sequences

Amino acid sequence

Length: 179

>KH.L171.13.v2.B.SL2-2
LLKPDSLGMDHDVTPTVDLTDGVPQCKDLNPYVLKGDGWVPQHISRANRSTYSFLCVYMT
FVFLLSCSLNILVIVATLKNKVLRQPLNYIIVNLAVVDLLSGFVGGFISIAANGAGYFFW
GKTMCQIEGYFVSNFGVTGLLSIAVMAFERYFVICKPFGPVRFEEKHSIFGTKLFQNTN

Nucleotide sequence

Length: 555

>KH2012:KH.L171.13.v2.B.SL2-2
GTTTGTTAAAACCGGATTCACTGGGTATGGATCATGACGTAACACCAACTGTTGACTTGA
CTGACGGAGTTCCACAATGTAAAGATCTTAACCCTTACGTACTAAAAGGAGATGGTTGGG
TGCCTCAACATATAAGTCGGGCCAATCGTTCAACGTATAGTTTCCTTTGTGTTTACATGA
CATTTGTCTTTCTGCTGTCTTGTTCTCTCAACATCCTTGTTATAGTGGCCACTTTGAAAA
ACAAGGTTCTTCGTCAGCCTCTGAATTACATTATTGTGAACCTAGCAGTTGTCGATCTTC
TAAGTGGTTTCGTTGGCGGGTTTATTAGCATTGCTGCTAACGGTGCGGGATATTTTTTCT
GGGGGAAGACAATGTGCCAGATTGAAGGATATTTTGTTTCAAATTTTGGTGTGACTGGTT
TGCTCTCAATTGCTGTAATGGCATTTGAAAGATATTTCGTAATTTGCAAACCATTTGGGC
CCGTTCGCTTTGAGGAGAAACATTCAATTTTTGGTACCAAACTGTTTCAAAATACTAATT
AAGCAAAAACTTGAC

InterProScan

PRINTS	GPCR_Rhodpsn (IPR000276) - T[54-78] 1.2E-10 - T[87-108] 1.2E-10 - T[132-154] 1.2E-10
ProSiteProfiles	GPCR_Rhodpsn_7TM (IPR017452) - T[69-179] 17.142
Pfam	GPCR_Rhodpsn (IPR000276) - T[70-163] 1.9E-18
ProSitePatterns	GPCR_Rhodpsn (IPR000276) - T[138-154] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
OPSR_HUMAN	49.6 %	118	2.08E-32
OPSG3_HUMAN	48.8 %	118	3.33E-32
OPSG_HUMAN	48.8 %	118	3.33E-32