- Transcript 'KH2012:KH.C8.737.v1....' >
- Molecular Tool 'Neurog b line>protocadherin C' >
- Transcript 'KH2012:KH.L171.16.v1...'
Transcript Model
Transcript Id
KH2012:KH.L171.16.v1.A.SL2-1
Possible name(s)
HOXA1; HOXB1; HOXD1
Gene model
Location
KhL171 [182,404 / 188,436]
Amino acid sequence
Length: 381
>KH.L171.16.v1.A.SL2-1
QQHTKDLHSSLIERCKMNSYMKYPVHASNSNSYTNHITPQGPFPTSHANKPTVLPHETSA
YGIYRTVESIRNHNESTVTPQNEGSPGRSSRENSPTGPVGTTVHSTDNSPYAYSPACLNY
NTSTPYCNQLVGADSNYVHQSYSINESYPTSNPLYTSTFSNNSLYSQYNPCILGPNVSRN
ETNDSVINSCGVQDRISPPNSAYDTPTASPQCTNTLPSNTYDWMKIKRNPPKSIYFSQNK
MVEYTYGVTGNNGRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALRLNETQVKIWFQN
RRMKQKKRDKEAEKLNGNKMSQSKSETLHGLKQTSTSSSTNPMYLASSSSNKSTGVTNYN
SLMLSHQFQKPAAEADMNIVT
Nucleotide sequence
Length: 1,605
>KH2012:KH.L171.16.v1.A.SL2-1
TATTGTGGTTTACTAGGTTGTTTAGACTTTAGGTAAAATTAAAGTTAAAACAAAAATTGT
AGCAGCAACACACGAAGGATCTGCACAGCTCGTTAATAGAAAGGTGTAAGATGAATTCGT
ACATGAAATACCCGGTTCATGCTTCAAACTCAAATTCCTATACCAACCACATCACCCCGC
AAGGCCCATTCCCTACTTCTCATGCCAATAAGCCAACTGTGTTACCACATGAAACATCTG
CATACGGAATATACAGAACTGTTGAATCCATCCGAAATCACAATGAATCGACAGTAACGC
CACAAAATGAAGGTAGTCCTGGCAGAAGCTCCCGAGAGAACTCTCCAACAGGACCTGTTG
GTACAACTGTACATTCAACAGATAATTCACCCTATGCATATTCACCTGCTTGCTTAAACT
ATAACACAAGTACTCCCTACTGCAACCAACTTGTGGGGGCCGATTCAAACTATGTACACC
AAAGTTATTCAATCAATGAATCGTACCCAACCTCCAATCCCTTATATACGAGCACATTTT
CAAACAATTCGTTATATTCCCAATACAACCCATGCATTTTGGGTCCAAATGTTTCTCGAA
ATGAAACGAACGACTCGGTCATTAATTCTTGCGGCGTCCAAGATCGCATTTCTCCGCCAA
ATTCCGCGTATGATACTCCTACTGCGAGCCCTCAATGTACCAACACACTGCCGAGTAACA
CTTACGATTGGATGAAGATAAAGAGAAACCCACCGAAAAGCATATATTTTTCACAAAACA
AAATGGTGGAGTACACCTACGGAGTAACTGGAAATAACGGCAGAACAAATTTCACTACAA
AACAGCTTACCGAGCTTGAAAAAGAGTTTCACTTCAATAAGTACTTAACAAGAGCCAGGA
GGGTTGAAATAGCAGCAGCATTGCGCCTTAATGAAACCCAGGTAAAAATATGGTTTCAAA
ATCGTCGTATGAAGCAGAAGAAAAGGGACAAAGAAGCAGAAAAGTTAAACGGAAATAAAA
TGTCACAAAGCAAAAGCGAAACGCTTCATGGCTTGAAACAAACTTCTACATCTTCATCAA
CTAATCCCATGTACCTCGCATCGTCATCATCAAACAAAAGCACTGGCGTCACAAACTACA
ATTCCTTAATGTTAAGTCATCAGTTCCAAAAACCTGCCGCAGAGGCGGACATGAATATAG
TCACGTGACCTTGACATCAATTACCAGCAAGGTAGCCAACCCAACAGCGAGTAACGTCAC
ACAATATACGTCCTCGTTTTGCGCATCATTGTAGATGACCAAGAAAGCGCATAAACTACA
CGCATTCATTTTATTTTATCTTTTAAAACACCCGTGAAACAAAATATAAAAAAAGTTTAA
GTATTTGGATTCGGTTTTATATATGTACAATATTCGTAAGCATTCTGTTTATTACAATGT
AGTTATATTTTAACGCCTGTTACAATTTGGATAACGCTTTATTTTAAAATCAACAGCACA
CACAAGCCTCTCCCTCTATATATATATGTTGCACAGATGTGTAACGTTCCTTCGTTTTAC
CTCATTTTGTACATATAGTCGATATTTCGCAAAAATGTATATTAC
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[241-310] 4.71E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[248-308] 20.374 |
| SMART |
Homeobox_dom (IPR001356) - T[250-312] 1.3E-25 |
| Pfam |
Homeobox_dom (IPR001356) - T[253-307] 2.1E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[254-308] 1.11626E-23 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[272-283] 7.2E-8 - T[287-297] 7.2E-8 - T[297-306] 7.2E-8 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[283-306] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA1_HUMAN | 64.957 % | 158 | 3.27E-45 |
| HXD1_HUMAN | 64.894 % | 133 | 8.64E-36 |
| HXB1_HUMAN | 62.832 % | 145 | 8.79E-41 |