- Transcript 'Cisavi.CG.ENS81.R828...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Molecular Tool 'Ci-fibrn MO (Yamada 2009)' >
- Region 'REG00000831' >
- Transcript 'KH2012:KH.L172.23.v1...'
Transcript Model
Transcript Id
KH2012:KH.L172.23.v1.R.ND1-1
Possible name(s)
EMX1; VAX1; VAX2
Gene model
Location
KhL172 [24,583 / 26,156]
Amino acid sequence
Length: 318
>KH.L172.23.v1.R.ND1-1
QTLLFQSESTNYLLSELERYNNILESYLYDVTARPTRSGTRRRRLSLFKRRPRSSKPLFH
NHVMISVENRELHRRLFMTSSIESRSDESDVTTDSFTSQSPSLSGVRELSWSSTSSCGDV
IKPEMTRSKKRKLFTIDSILAEDTERPAKVRRSTSPYTSAQDVGIYYSMFHPMRHLPFIQ
SCIGSPFQPPPGGFPTPPITPNPHWGHRGHFTSSPLATNDVTARGNDVTHTSPPLVDKKR
MRTIFTSDQLEKLEDEFTRQHYMVGSERYFLAKRLNLSETQVKVWFQNRRIKWRKRRHQV
TDQSNFNVLKLAGSLDNR
Nucleotide sequence
Length: 1,169
>KH2012:KH.L172.23.v1.R.ND1-1
ATATTATTAAATCAAAACATGCAACAAACAGGATTGTCGAGTAATAATAGCAATTGTGGG
AACAATCGGGGTTTCTTCGAATATCGCGTTTATTACGTCATAATCGAACTGCAATCCGAG
AAAATTTGTCTCTATGACGTCACGATGTCAATTGTTCGGGTAAATCAAAGACGGCGACGT
TCGACAACTTTCAACTTGTTATCATGACGTAACAGACGCTATTGTTCCAATCAGAATCAA
CTAATTATCTTTTATCAGAACTTGAGCGTTACAATAATATTTTAGAATCTTATCTTTATG
ACGTCACAGCACGCCCAACGCGATCTGGAACGCGGAGAAGAAGGCTGTCGCTATTTAAGC
GTCGACCGCGGTCATCCAAACCATTATTCCACAACCACGTGATGATTTCAGTCGAGAATC
GCGAGTTGCATCGAAGGCTCTTTATGACGTCATCAATAGAAAGCAGGTCAGATGAAAGTG
ACGTCACGACAGATTCGTTTACTTCACAATCTCCGTCATTGTCAGGAGTTCGAGAACTAT
CATGGTCGTCTACGTCATCGTGTGGTGACGTCATTAAACCGGAAATGACGCGCAGTAAGA
AACGAAAGTTGTTTACGATAGATTCGATTCTCGCAGAAGATACAGAGAGACCAGCTAAAG
TTCGACGATCTACGTCACCGTATACGTCAGCACAGGATGTTGGGATCTACTACTCCATGT
TCCACCCCATGCGCCATCTTCCTTTTATACAATCTTGTATCGGGTCACCGTTTCAACCCC
CACCAGGGGGTTTCCCTACCCCACCAATCACCCCGAACCCACATTGGGGTCACAGGGGTC
ATTTTACGTCATCACCCCTAGCAACCAATGACGTCACTGCAAGAGGAAATGACGTCACAC
ACACGTCACCCCCCCTAGTGGACAAGAAGAGGATGCGAACCATCTTTACTTCGGACCAAC
TTGAAAAGTTGGAAGATGAATTCACTCGGCAACATTACATGGTTGGAAGTGAAAGATATT
TCCTCGCCAAGCGACTTAATCTCTCCGAAACACAGGTGAAAGTTTGGTTTCAAAATCGTC
GAATTAAGTGGAGGAAACGTCGCCACCAAGTGACCGACCAATCCAACTTCAATGTACTTA
AACTAGCAGGAAGTTTAGATAATAGATGA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[226-296] 9.41E-23 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[236-296] 20.358 |
| SMART |
Homeobox_dom (IPR001356) - T[238-300] 1.3E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[239-295] 3.9E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[239-297] 3.19942E-19 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[271-294] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VAX1_HUMAN | 66.667 % | 79.7 | 7.14E-17 |
| EMX1_HUMAN | 37.857 % | 78.2 | 8.8E-17 |
| VAX2_HUMAN | 66.667 % | 79 | 8.55E-17 |