Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L172.26.v1.A.nonSL3-1

Possible name(s)

NAA38; SNRPB; SNRPN

Gene model

KH2012:KH.L172.26

Location

KhL172 [53,053 / 54,367]

Sequences

Amino acid sequence

Length: 172

>KH.L172.26.v1.A.nonSL3-1
LLIIFQPPRGGSKLNNHINYRMRCILQDGRVFIGTFKAFDKHMNLILVDCDEFRRVRPKK
GATDREEKRTLGLVLLRGEHLVSMSVEGPPPSGKGMGVPGGITRGPGQGRAAGRGMGGPG
GPAPGLHGPMHGVGGPPPGSMAPQRGGFGPPPGMRGPPPGMGRGGFGRGFGY

Nucleotide sequence

Length: 732

>KH2012:KH.L172.26.v1.A.nonSL3-1
GTTACGTATTTCTACCAGTTTATTAATATTACGTCATCATGGTAAGTTTAAGTTAAATAA
TTAGTTACTTAATATTAATTATTAATTATATTTCAGCCTCCAAGGGGTGGGTCAAAGTTG
AACAATCACATCAACTATCGCATGCGATGTATTTTACAGGATGGCCGTGTTTTTATCGGA
ACGTTTAAAGCGTTCGACAAACATATGAATCTGATCCTTGTCGACTGCGATGAGTTCCGT
CGCGTACGACCAAAGAAAGGAGCGACAGACCGTGAAGAGAAACGGACACTAGGTCTCGTA
CTTTTACGAGGAGAACATCTCGTTTCGATGTCAGTTGAAGGTCCCCCGCCGTCCGGGAAA
GGAATGGGTGTTCCTGGCGGTATCACTAGAGGGCCTGGCCAAGGTCGAGCGGCTGGGAGG
GGCATGGGGGGCCCGGGGGGTCCAGCCCCTGGGTTGCATGGTCCCATGCATGGTGTCGGG
GGTCCACCGCCGGGGTCAATGGCCCCACAACGTGGTGGGTTCGGCCCTCCCCCAGGTATG
AGGGGCCCACCCCCAGGTATGGGAAGGGGGGGCTTTGGTCGAGGGTTCGGATACTAAGGG
TCACATGCCCCCCGTCGAGCTGCGAGCAGGAGGTCTGTTAACCAGGCCTCGAATTCCTTT
TTTCAGCGGAATTTTTCGGCGAAAATTTGTCTGACTTTTTTTATCGTGAGTAAAATAAAA
TTGAAATGAAAA

InterProScan

SMART	LSM_dom_euk/arc (IPR001163) - T[12-86] 4.0E-24
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[12-132] 8.31E-24
Pfam	LSM_dom_euk/arc (IPR001163) - T[13-85] 2.0E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RSMN_HUMAN	61.702 %	150	5.17E-46
RSMB_HUMAN	61.702 %	151	2.7E-46