- Transcript 'KH2012:KH.S345.3.v1....' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C6.15.v5.A...' >
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- Transcript 'KH2012:KH.L173.5.v1....'
Transcript Model
Transcript Id
KH2012:KH.L173.5.v1.A.nonSL13-1
Possible name(s)
CTCF; CTCFL; ZNF501
Gene model
Location
KhL173 [45,153 / 51,480]
Amino acid sequence
Length: 529
>KH.L173.5.v1.A.nonSL13-1
VEMADDGKDSVEVTSQIESVNGTVAPPNDSIEPEENEVSEKNEEKIIEEVSNEAPAEAPV
EDGTTTTVQFIAVSADEHARMVTAGELPESVHGADVHMQIPGAEAQQVRLIAVDSNGVPV
TESAILQAAAEQAGIVFITKDDNGHDSQITIDQAMQLSMRENPPMITATTAAVVLEQKEK
EVHQDTDGNDTEDESETKKPSVRKPRLKLRVYSQKDGGVDEVATSFLDDGSLALTDEVET
LEEKPNDESVYEFQRQRGTMEEWRDRECEIILKDILQTLKDEDPPTGGDTEQPSDVTMLD
PTMFKKNSKRATDKSRDRRKIYQCRECSFYSHRHSNLVRHMKIHTDERPYKCHLCERSFR
TNTLLRNHINTHTGVKPYKCTVDGCVMAFVTSGELTRHTRYIHTHEKPFRCTLCDYASVE
ISKLRRHFRSHTGERPYSCEECGKAFADSFHLKRHRMSHTGEKPYECPECNQRFTQRGSV
KMHIMQQHTKTAPKFKCEICRTLLGRKSDLNVHMRKQHAFQVIMMSLCW
Nucleotide sequence
Length: 1,591
>KH2012:KH.L173.5.v1.A.nonSL13-1
AGTTGAGATGGCAGATGATGGAAAAGATAGCGTTGAAGTAACTTCACAAATTGAGTCGGT
TAACGGCACTGTAGCGCCACCCAATGACTCGATTGAGCCCGAGGAAAATGAAGTGTCGGA
AAAAAATGAAGAAAAAATTATTGAAGAAGTTTCGAATGAGGCTCCTGCCGAGGCCCCTGT
GGAAGATGGGACAACGACAACCGTTCAATTCATCGCTGTATCAGCTGATGAACATGCTCG
TATGGTCACCGCTGGCGAGTTACCGGAGAGCGTGCATGGGGCCGACGTACATATGCAGAT
ACCAGGCGCTGAAGCACAACAAGTTCGATTAATCGCAGTAGACAGCAACGGTGTTCCCGT
CACCGAGTCAGCGATACTGCAAGCAGCTGCGGAACAAGCGGGCATTGTTTTCATAACAAA
GGACGACAATGGACATGATTCGCAGATAACTATTGACCAAGCCATGCAGTTGTCCATGAG
GGAGAACCCCCCCATGATAACGGCGACCACTGCAGCCGTCGTGCTCGAACAAAAAGAGAA
AGAAGTTCACCAGGATACCGATGGCAACGATACAGAAGACGAAAGCGAGACAAAGAAACC
ATCGGTACGGAAACCACGATTGAAACTTCGCGTGTACAGTCAGAAGGACGGTGGAGTTGA
CGAGGTGGCAACGTCGTTCCTCGATGACGGGAGCCTCGCTCTCACTGATGAAGTTGAAAC
TTTGGAAGAAAAACCAAACGATGAATCAGTTTACGAGTTCCAGCGTCAGCGAGGAACAAT
GGAAGAATGGAGAGACAGGGAATGTGAAATTATCTTGAAGGATATTTTACAAACATTGAA
GGACGAGGATCCACCAACGGGTGGCGACACAGAGCAACCCAGTGATGTCACAATGCTTGA
CCCAACCATGTTTAAAAAGAATTCGAAGCGAGCTACGGATAAAAGTCGCGACCGTCGTAA
GATTTATCAGTGTCGGGAATGTTCGTTCTACAGCCATCGTCATAGTAACTTGGTTCGGCA
CATGAAGATCCACACCGATGAGCGACCTTATAAATGCCATCTTTGCGAACGATCGTTTCG
TACGAACACATTACTTCGTAACCACATCAACACACATACAGGAGTGAAGCCGTACAAATG
TACAGTTGATGGTTGTGTTATGGCATTCGTAACCAGTGGTGAGCTAACCCGACACACAAG
GTACATTCACACCCACGAGAAACCTTTCCGATGCACGTTGTGCGATTATGCGAGCGTCGA
AATCAGCAAACTACGCCGACATTTCCGTTCCCACACTGGGGAGCGACCTTATTCTTGCGA
GGAGTGTGGCAAAGCGTTTGCTGATAGTTTTCATTTGAAACGACATCGAATGTCGCACAC
CGGTGAGAAACCTTACGAGTGTCCGGAATGTAACCAGCGTTTTACCCAGCGTGGTAGTGT
GAAGATGCATATCATGCAGCAACACACGAAGACGGCTCCGAAGTTTAAATGCGAGATTTG
TCGAACTTTGTTGGGAAGGAAAAGCGATTTAAATGTCCATATGCGGAAGCAACACGCTTT
CCAGGTGATTATGATGTCACTATGTTGGTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[320-372] 2.33E-13 - T[358-415] 8.33E-17 - T[422-474] 1.18E-20 - T[493-520] 2.86E-11 |
| SMART |
Znf_C2H2_type (IPR013087) - T[322-344] 0.032 - T[350-372] 0.0054 - T[378-403] 0.0038 - T[409-431] 0.039 - T[437-459] 9.9E-4 - T[465-488] 6.3E-4 - T[495-518] 0.022 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[322-349] 13.36 - T[350-377] 14.336 - T[378-408] 13.63 - T[409-436] 13.38 - T[437-464] 17.308 - T[465-493] 12.175 - T[495-519] 8.954 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[352-372] . - T[380-403] . - T[439-459] . - T[467-488] . - T[497-518] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CTCF_HUMAN | 64.322 % | 285 | 7.88E-88 |
| CTCFL_HUMAN | 53.556 % | 275 | 1.09E-84 |
| ZN501_HUMAN | 40.708 % | 162 | 5.37E-46 |