- Transcript 'Phfumi.CG.MTP2014.S7...' >
- Molecular Tool 'Klf4-MO (CLSTR224-MO) (Lemaire Lab)' >
- Transcript 'KH2012:KH.S930.2.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.L173.5.v1....'
Transcript Model
Transcript Id
KH2012:KH.L173.5.v1.A.SL1-1
Possible name(s)
CTCF; CTCFL; ZNF501
Gene model
Location
KhL173 [45,082 / 51,480]
Amino acid sequence
Length: 534
>KH.L173.5.v1.A.SL1-1
VVRILVEMADDGKDSVEVTSQIESVNGTVAPPNDSIEPEENEVSEKNEEKIIEEVSNEAP
AEAPVEDGTTTTVQFIAVSADEHARMVTAGELPESVHGADVHMQIPGAEAQQVRLIAVDS
NGVPVTESAILQAAAEQAGIVFITKDDNGHDSQITIDQAMQLSMRENPPMITATTAAVVL
EQKEKEVHQDTDGNDTEDESETKKPSVRKPRLKLRVYSQKDGGVDEVATSFLDDGSLALT
DEVETLEEKPNDESVYEFQRQRGTMEEWRDRECEIILKDILQTLKDEDPPTGGDTEQPSD
VTMLDPTMFKKNSKRATDKSRDRRKIYQCRECSFYSHRHSNLVRHMKIHTDERPYKCHLC
ERSFRTNTLLRNHINTHTGVKPYKCTVDGCVMAFVTSGELTRHTRYIHTHEKPFRCTLCD
YASVEISKLRRHFRSHTGERPYSCEECGKAFADSFHLKRHRMSHTGEKPYECPECNQRFT
QRGSVKMHIMQQHTKTAPKFKCEICRTLLGRKSDLNVHMRKQHAFQVIMMSLCW
Nucleotide sequence
Length: 1,662
>KH2012:KH.L173.5.v1.A.SL1-1
TGAACCCAGCTATTGTAACGACATTGTCGCACTTATACGGCAAGTTTTACTTTGTAAGTT
GTTCGTATTTTAGTTGAGATGGCAGATGATGGAAAAGATAGCGTTGAAGTAACTTCACAA
ATTGAGTCGGTTAACGGCACTGTAGCGCCACCCAATGACTCGATTGAGCCCGAGGAAAAT
GAAGTGTCGGAAAAAAATGAAGAAAAAATTATTGAAGAAGTTTCGAATGAGGCTCCTGCC
GAGGCCCCTGTGGAAGATGGGACAACGACAACCGTTCAATTCATCGCTGTATCAGCTGAT
GAACATGCTCGTATGGTCACCGCTGGCGAGTTACCGGAGAGCGTGCATGGGGCCGACGTA
CATATGCAGATACCAGGCGCTGAAGCACAACAAGTTCGATTAATCGCAGTAGACAGCAAC
GGTGTTCCCGTCACCGAGTCAGCGATACTGCAAGCAGCTGCGGAACAAGCGGGCATTGTT
TTCATAACAAAGGACGACAATGGACATGATTCGCAGATAACTATTGACCAAGCCATGCAG
TTGTCCATGAGGGAGAACCCCCCCATGATAACGGCGACCACTGCAGCCGTCGTGCTCGAA
CAAAAAGAGAAAGAAGTTCACCAGGATACCGATGGCAACGATACAGAAGACGAAAGCGAG
ACAAAGAAACCATCGGTACGGAAACCACGATTGAAACTTCGCGTGTACAGTCAGAAGGAC
GGTGGAGTTGACGAGGTGGCAACGTCGTTCCTCGATGACGGGAGCCTCGCTCTCACTGAT
GAAGTTGAAACTTTGGAAGAAAAACCAAACGATGAATCAGTTTACGAGTTCCAGCGTCAG
CGAGGAACAATGGAAGAATGGAGAGACAGGGAATGTGAAATTATCTTGAAGGATATTTTA
CAAACATTGAAGGACGAGGATCCACCAACGGGTGGCGACACAGAGCAACCCAGTGATGTC
ACAATGCTTGACCCAACCATGTTTAAAAAGAATTCGAAGCGAGCTACGGATAAAAGTCGC
GACCGTCGTAAGATTTATCAGTGTCGGGAATGTTCGTTCTACAGCCATCGTCATAGTAAC
TTGGTTCGGCACATGAAGATCCACACCGATGAGCGACCTTATAAATGCCATCTTTGCGAA
CGATCGTTTCGTACGAACACATTACTTCGTAACCACATCAACACACATACAGGAGTGAAG
CCGTACAAATGTACAGTTGATGGTTGTGTTATGGCATTCGTAACCAGTGGTGAGCTAACC
CGACACACAAGGTACATTCACACCCACGAGAAACCTTTCCGATGCACGTTGTGCGATTAT
GCGAGCGTCGAAATCAGCAAACTACGCCGACATTTCCGTTCCCACACTGGGGAGCGACCT
TATTCTTGCGAGGAGTGTGGCAAAGCGTTTGCTGATAGTTTTCATTTGAAACGACATCGA
ATGTCGCACACCGGTGAGAAACCTTACGAGTGTCCGGAATGTAACCAGCGTTTTACCCAG
CGTGGTAGTGTGAAGATGCATATCATGCAGCAACACACGAAGACGGCTCCGAAGTTTAAA
TGCGAGATTTGTCGAACTTTGTTGGGAAGGAAAAGCGATTTAAATGTCCATATGCGGAAG
CAACACGCTTTCCAGGTGATTATGATGTCACTATGTTGGTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[325-377] 2.33E-13 - T[363-420] 8.48E-17 - T[427-479] 1.1E-20 - T[498-525] 3.03E-11 |
| SMART |
Znf_C2H2_type (IPR013087) - T[327-349] 0.032 - T[355-377] 0.0054 - T[383-408] 0.0038 - T[414-436] 0.039 - T[442-464] 9.9E-4 - T[470-493] 6.3E-4 - T[500-523] 0.022 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[327-354] 13.36 - T[355-382] 14.336 - T[383-413] 13.63 - T[414-441] 13.38 - T[442-469] 17.308 - T[470-498] 12.175 - T[500-524] 8.954 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[357-377] . - T[385-408] . - T[444-464] . - T[472-493] . - T[502-523] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CTCF_HUMAN | 64.322 % | 285 | 9.78E-88 |
| CTCFL_HUMAN | 53.556 % | 275 | 1.15E-84 |
| ZN501_HUMAN | 40.265 % | 162 | 5.05E-46 |