- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'KH2012:KH.C9.317.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S9...' >
- Transcript 'Harore.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.L173.5.v3....'
Transcript Model
Transcript Id
KH2012:KH.L173.5.v3.A.nonSL4-1
Possible name(s)
CTCF; CTCFL; ZNF501
Gene model
Location
KhL173 [44,972 / 51,480]
Amino acid sequence
Length: 524
>KH.L173.5.v3.A.nonSL4-1
TKSKNLFQTGKNLAKSSYLLSFELEMADDGKDSVEVTSQIESVNGTVAPPNDSIEPEENE
VSEKNEEKIIEEVSNEAPAEAPVEDGTTTTVQFIAVSADEHARMVTAGELPESVHGADVH
MQIPGAEAQQVRLIAVDSNGVPVTESAILQAAAEQAGIVFITKDDNGHDSQITIDQAMQL
SMRENPPMITATTAAVVLEQKEKEVHQDTDGNDTEDESETKKPSVRKPRLKLRVYSQKDG
GVDEVATSFLDDGSLALTDEVETLEEKPNDESVYEFQDPPTGGDTEQPSDVTMLDPTMFK
KNSKRATDKSRDRRKIYQCRECSFYSHRHSNLVRHMKIHTDERPYKCHLCERSFRTNTLL
RNHINTHTGVKPYKCTVDGCVMAFVTSGELTRHTRYIHTHEKPFRCTLCDYASVEISKLR
RHFRSHTGERPYSCEECGKAFADSFHLKRHRMSHTGEKPYECPECNQRFTQRGSVKMHIM
QQHTKTAPKFKCEICRTLLGRKSDLNVHMRKQHAFQVIMMSLCW
Nucleotide sequence
Length: 1,575
>KH2012:KH.L173.5.v3.A.nonSL4-1
ACTAAATCGAAGAATTTATTTCAAACCGGGAAGAATTTGGCCAAAAGTTCATATTTATTG
TCTTTTGAACTTGAGATGGCAGATGATGGAAAAGATAGCGTTGAAGTAACTTCACAAATT
GAGTCGGTTAACGGCACTGTAGCGCCACCCAATGACTCGATTGAGCCCGAGGAAAATGAA
GTGTCGGAAAAAAATGAAGAAAAAATTATTGAAGAAGTTTCGAATGAGGCTCCTGCCGAG
GCCCCTGTGGAAGATGGGACAACGACAACCGTTCAATTCATCGCTGTATCAGCTGATGAA
CATGCTCGTATGGTCACCGCTGGCGAGTTACCGGAGAGCGTGCATGGGGCCGACGTACAT
ATGCAGATACCAGGCGCTGAAGCACAACAAGTTCGATTAATCGCAGTAGACAGCAACGGT
GTTCCCGTCACCGAGTCAGCGATACTGCAAGCAGCTGCGGAACAAGCGGGCATTGTTTTC
ATAACAAAGGACGACAATGGACATGATTCGCAGATAACTATTGACCAAGCCATGCAGTTG
TCCATGAGGGAGAACCCCCCCATGATAACGGCGACCACTGCAGCCGTCGTGCTCGAACAA
AAAGAGAAAGAAGTTCACCAGGATACCGATGGCAACGATACAGAAGACGAAAGCGAGACA
AAGAAACCATCGGTACGGAAACCACGATTGAAACTTCGCGTGTACAGTCAGAAGGACGGT
GGAGTTGACGAGGTGGCAACGTCGTTCCTCGATGACGGGAGCCTCGCTCTCACTGATGAA
GTTGAAACTTTGGAAGAAAAACCAAACGATGAATCAGTTTACGAGTTCCAGGATCCACCA
ACGGGTGGCGACACAGAGCAACCCAGTGATGTCACAATGCTTGACCCAACCATGTTTAAA
AAGAATTCGAAGCGAGCTACGGATAAAAGTCGCGACCGTCGTAAGATTTATCAGTGTCGG
GAATGTTCGTTCTACAGCCATCGTCATAGTAACTTGGTTCGGCACATGAAGATCCACACC
GATGAGCGACCTTATAAATGCCATCTTTGCGAACGATCGTTTCGTACGAACACATTACTT
CGTAACCACATCAACACACATACAGGAGTGAAGCCGTACAAATGTACAGTTGATGGTTGT
GTTATGGCATTCGTAACCAGTGGTGAGCTAACCCGACACACAAGGTACATTCACACCCAC
GAGAAACCTTTCCGATGCACGTTGTGCGATTATGCGAGCGTCGAAATCAGCAAACTACGC
CGACATTTCCGTTCCCACACTGGGGAGCGACCTTATTCTTGCGAGGAGTGTGGCAAAGCG
TTTGCTGATAGTTTTCATTTGAAACGACATCGAATGTCGCACACCGGTGAGAAACCTTAC
GAGTGTCCGGAATGTAACCAGCGTTTTACCCAGCGTGGTAGTGTGAAGATGCATATCATG
CAGCAACACACGAAGACGGCTCCGAAGTTTAAATGCGAGATTTGTCGAACTTTGTTGGGA
AGGAAAAGCGATTTAAATGTCCATATGCGGAAGCAACACGCTTTCCAGGTGATTATGATG
TCACTATGTTGGTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[315-367] 2.24E-13 - T[353-410] 8.18E-17 - T[417-469] 1.18E-20 - T[488-515] 2.86E-11 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[317-344] 13.36 - T[345-372] 14.336 - T[373-403] 13.63 - T[404-431] 13.38 - T[432-459] 17.308 - T[460-488] 12.175 - T[490-514] 8.954 |
| SMART |
Znf_C2H2_type (IPR013087) - T[317-339] 0.032 - T[345-367] 0.0054 - T[373-398] 0.0038 - T[404-426] 0.039 - T[432-454] 9.9E-4 - T[460-483] 6.3E-4 - T[490-513] 0.022 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[347-367] . - T[375-398] . - T[434-454] . - T[462-483] . - T[492-513] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CTCF_HUMAN | 64.322 % | 285 | 6.83E-88 |
| CTCFL_HUMAN | 52.227 % | 276 | 6.16E-85 |
| ZN501_HUMAN | 40.708 % | 162 | 4.93E-46 |