- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C2.209.v1....' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Moocci.CG.ELv1_2.S54...' >
- Transcript 'KH2012:KH.L173.5.v3....'
Transcript Model
Transcript Id
KH2012:KH.L173.5.v3.A.nonSL9-1
Possible name(s)
CTCF; CTCFL; ZNF501
Gene model
Location
KhL173 [44,952 / 51,480]
Amino acid sequence
Length: 530
>KH.L173.5.v3.A.nonSL9-1
CRVCFETKSKNLFQTGKNLAKSSYLLSFELEMADDGKDSVEVTSQIESVNGTVAPPNDSI
EPEENEVSEKNEEKIIEEVSNEAPAEAPVEDGTTTTVQFIAVSADEHARMVTAGELPESV
HGADVHMQIPGAEAQQVRLIAVDSNGVPVTESAILQAAAEQAGIVFITKDDNGHDSQITI
DQAMQLSMRENPPMITATTAAVVLEQKEKEVHQDTDGNDTEDESETKKPSVRKPRLKLRV
YSQKDGGVDEVATSFLDDGSLALTDEVETLEEKPNDESVYEFQDPPTGGDTEQPSDVTML
DPTMFKKNSKRATDKSRDRRKIYQCRECSFYSHRHSNLVRHMKIHTDERPYKCHLCERSF
RTNTLLRNHINTHTGVKPYKCTVDGCVMAFVTSGELTRHTRYIHTHEKPFRCTLCDYASV
EISKLRRHFRSHTGERPYSCEECGKAFADSFHLKRHRMSHTGEKPYECPECNQRFTQRGS
VKMHIMQQHTKTAPKFKCEICRTLLGRKSDLNVHMRKQHAFQVIMMSLCW
Nucleotide sequence
Length: 1,595
>KH2012:KH.L173.5.v3.A.nonSL9-1
AGTGCCGGGTTTGTTTTGAAACTAAATCGAAGAATTTATTTCAAACCGGGAAGAATTTGG
CCAAAAGTTCATATTTATTGTCTTTTGAACTTGAGATGGCAGATGATGGAAAAGATAGCG
TTGAAGTAACTTCACAAATTGAGTCGGTTAACGGCACTGTAGCGCCACCCAATGACTCGA
TTGAGCCCGAGGAAAATGAAGTGTCGGAAAAAAATGAAGAAAAAATTATTGAAGAAGTTT
CGAATGAGGCTCCTGCCGAGGCCCCTGTGGAAGATGGGACAACGACAACCGTTCAATTCA
TCGCTGTATCAGCTGATGAACATGCTCGTATGGTCACCGCTGGCGAGTTACCGGAGAGCG
TGCATGGGGCCGACGTACATATGCAGATACCAGGCGCTGAAGCACAACAAGTTCGATTAA
TCGCAGTAGACAGCAACGGTGTTCCCGTCACCGAGTCAGCGATACTGCAAGCAGCTGCGG
AACAAGCGGGCATTGTTTTCATAACAAAGGACGACAATGGACATGATTCGCAGATAACTA
TTGACCAAGCCATGCAGTTGTCCATGAGGGAGAACCCCCCCATGATAACGGCGACCACTG
CAGCCGTCGTGCTCGAACAAAAAGAGAAAGAAGTTCACCAGGATACCGATGGCAACGATA
CAGAAGACGAAAGCGAGACAAAGAAACCATCGGTACGGAAACCACGATTGAAACTTCGCG
TGTACAGTCAGAAGGACGGTGGAGTTGACGAGGTGGCAACGTCGTTCCTCGATGACGGGA
GCCTCGCTCTCACTGATGAAGTTGAAACTTTGGAAGAAAAACCAAACGATGAATCAGTTT
ACGAGTTCCAGGATCCACCAACGGGTGGCGACACAGAGCAACCCAGTGATGTCACAATGC
TTGACCCAACCATGTTTAAAAAGAATTCGAAGCGAGCTACGGATAAAAGTCGCGACCGTC
GTAAGATTTATCAGTGTCGGGAATGTTCGTTCTACAGCCATCGTCATAGTAACTTGGTTC
GGCACATGAAGATCCACACCGATGAGCGACCTTATAAATGCCATCTTTGCGAACGATCGT
TTCGTACGAACACATTACTTCGTAACCACATCAACACACATACAGGAGTGAAGCCGTACA
AATGTACAGTTGATGGTTGTGTTATGGCATTCGTAACCAGTGGTGAGCTAACCCGACACA
CAAGGTACATTCACACCCACGAGAAACCTTTCCGATGCACGTTGTGCGATTATGCGAGCG
TCGAAATCAGCAAACTACGCCGACATTTCCGTTCCCACACTGGGGAGCGACCTTATTCTT
GCGAGGAGTGTGGCAAAGCGTTTGCTGATAGTTTTCATTTGAAACGACATCGAATGTCGC
ACACCGGTGAGAAACCTTACGAGTGTCCGGAATGTAACCAGCGTTTTACCCAGCGTGGTA
GTGTGAAGATGCATATCATGCAGCAACACACGAAGACGGCTCCGAAGTTTAAATGCGAGA
TTTGTCGAACTTTGTTGGGAAGGAAAAGCGATTTAAATGTCCATATGCGGAAGCAACACG
CTTTCCAGGTGATTATGATGTCACTATGTTGGTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[321-373] 2.33E-13 - T[359-416] 8.33E-17 - T[423-475] 1.1E-20 - T[494-521] 2.86E-11 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[323-350] 13.36 - T[351-378] 14.336 - T[379-409] 13.63 - T[410-437] 13.38 - T[438-465] 17.308 - T[466-494] 12.175 - T[496-520] 8.954 |
| SMART |
Znf_C2H2_type (IPR013087) - T[323-345] 0.032 - T[351-373] 0.0054 - T[379-404] 0.0038 - T[410-432] 0.039 - T[438-460] 9.9E-4 - T[466-489] 6.3E-4 - T[496-519] 0.022 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[353-373] . - T[381-404] . - T[440-460] . - T[468-489] . - T[498-519] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CTCF_HUMAN | 64.322 % | 285 | 1.13E-87 |
| CTCFL_HUMAN | 52.227 % | 275 | 1.22E-84 |
| ZN501_HUMAN | 40.708 % | 161 | 6.65E-46 |