- Transcript 'KH2012:KH.L18.9.v1.A...' >
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- Transcript 'KH2012:KH.L173.5.v4....'
Transcript Model
Transcript Id
KH2012:KH.L173.5.v4.A.ND2-1
Possible name(s)
CTCF; CTCFL; ZNF501
Gene model
Location
KhL173 [44,887 / 51,480]
Amino acid sequence
Length: 574
>KH.L173.5.v4.A.ND2-1
LSVAPSSNFCSPTKGQCRVCFETKSKNLFQTGKNLAKSSYLLSFELEMADDGKDSVEVTS
QIESVNGTVAPPNDSIEPEENEVSEKNEEKIIEEVSNEAPAEAPVEDGTTTTVQFIAVSA
DEHARMVTAGELPESVHGADVHMQIPGAEAQQVRLIAVDSNGVPVTESAILQAAAEQAGI
VFITKDDNGHDSQITIDQAMQLSMRENPPMITATTAAVVLEQKEKEVHQDTDGNDTEDES
ETKKPSVRKPRLKLRVYSQKDGGVDEVATSFLDDGSLALTDEVETLEEKPNDESVYEFQR
QRGTMEEWRDRECEIILKDILQTLKDEDPPTGGDTEQPSDVTMLDPTMFKKNSKRATDKS
RDRRKIYQCRECSFYSHRHSNLVRHMKIHTDERPYKCHLCERSFRTNTLLRNHINTHTGV
KPYKCTVDGCVMAFVTSGELTRHTRYIHTHEKPFRCTLCDYASVEISKLRRHFRSHTGER
PYSCEECGKAFADSFHLKRHRMSHTGEKPYECPECNQRFTQRGSVKMHIMQQHTKTAPKF
KCEICRTLLGRKSDLNVHMRKQHAFQVIMMSLCW
Nucleotide sequence
Length: 1,744
>KH2012:KH.L173.5.v4.A.ND2-1
GCGGCGTCGCCATCTTTGATTGTCCGTGGCGCCCTCAAGTAATTTTTGTTCACCCACCAA
AGGGCAGTGCCGGGTTTGTTTTGAAACTAAATCGAAGAATTTATTTCAAACCGGGAAGAA
TTTGGCCAAAAGTTCATATTTATTGTCTTTTGAACTTGAGATGGCAGATGATGGAAAAGA
TAGCGTTGAAGTAACTTCACAAATTGAGTCGGTTAACGGCACTGTAGCGCCACCCAATGA
CTCGATTGAGCCCGAGGAAAATGAAGTGTCGGAAAAAAATGAAGAAAAAATTATTGAAGA
AGTTTCGAATGAGGCTCCTGCCGAGGCCCCTGTGGAAGATGGGACAACGACAACCGTTCA
ATTCATCGCTGTATCAGCTGATGAACATGCTCGTATGGTCACCGCTGGCGAGTTACCGGA
GAGCGTGCATGGGGCCGACGTACATATGCAGATACCAGGCGCTGAAGCACAACAAGTTCG
ATTAATCGCAGTAGACAGCAACGGTGTTCCCGTCACCGAGTCAGCGATACTGCAAGCAGC
TGCGGAACAAGCGGGCATTGTTTTCATAACAAAGGACGACAATGGACATGATTCGCAGAT
AACTATTGACCAAGCCATGCAGTTGTCCATGAGGGAGAACCCCCCCATGATAACGGCGAC
CACTGCAGCCGTCGTGCTCGAACAAAAAGAGAAAGAAGTTCACCAGGATACCGATGGCAA
CGATACAGAAGACGAAAGCGAGACAAAGAAACCATCGGTACGGAAACCACGATTGAAACT
TCGCGTGTACAGTCAGAAGGACGGTGGAGTTGACGAGGTGGCAACGTCGTTCCTCGATGA
CGGGAGCCTCGCTCTCACTGATGAAGTTGAAACTTTGGAAGAAAAACCAAACGATGAATC
AGTTTACGAGTTCCAGCGTCAGCGAGGAACAATGGAAGAATGGAGAGACAGGGAATGTGA
AATTATCTTGAAGGATATTTTACAAACATTGAAGGACGAGGATCCACCAACGGGTGGCGA
CACAGAGCAACCCAGTGATGTCACAATGCTTGACCCAACCATGTTTAAAAAGAATTCGAA
GCGAGCTACGGATAAAAGTCGCGACCGTCGTAAGATTTATCAGTGTCGGGAATGTTCGTT
CTACAGCCATCGTCATAGTAACTTGGTTCGGCACATGAAGATCCACACCGATGAGCGACC
TTATAAATGCCATCTTTGCGAACGATCGTTTCGTACGAACACATTACTTCGTAACCACAT
CAACACACATACAGGAGTGAAGCCGTACAAATGTACAGTTGATGGTTGTGTTATGGCATT
CGTAACCAGTGGTGAGCTAACCCGACACACAAGGTACATTCACACCCACGAGAAACCTTT
CCGATGCACGTTGTGCGATTATGCGAGCGTCGAAATCAGCAAACTACGCCGACATTTCCG
TTCCCACACTGGGGAGCGACCTTATTCTTGCGAGGAGTGTGGCAAAGCGTTTGCTGATAG
TTTTCATTTGAAACGACATCGAATGTCGCACACCGGTGAGAAACCTTACGAGTGTCCGGA
ATGTAACCAGCGTTTTACCCAGCGTGGTAGTGTGAAGATGCATATCATGCAGCAACACAC
GAAGACGGCTCCGAAGTTTAAATGCGAGATTTGTCGAACTTTGTTGGGAAGGAAAAGCGA
TTTAAATGTCCATATGCGGAAGCAACACGCTTTCCAGGTGATTATGATGTCACTATGTTG
GTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[365-417] 2.66E-13 - T[403-460] 1.0E-16 - T[467-519] 1.26E-20 - T[538-565] 3.11E-11 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[367-394] 13.36 - T[395-422] 14.336 - T[423-453] 13.63 - T[454-481] 13.38 - T[482-509] 17.308 - T[510-538] 12.175 - T[540-564] 8.954 |
| SMART |
Znf_C2H2_type (IPR013087) - T[367-389] 0.032 - T[395-417] 0.0054 - T[423-448] 0.0038 - T[454-476] 0.039 - T[482-504] 9.9E-4 - T[510-533] 6.3E-4 - T[540-563] 0.022 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[397-417] . - T[425-448] . - T[484-504] . - T[512-533] . - T[542-563] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CTCF_HUMAN | 64.322 % | 285 | 2.95E-87 |
| CTCFL_HUMAN | 53.556 % | 275 | 4.91E-84 |
| ZN501_HUMAN | 40.265 % | 161 | 1.32E-45 |