- Transcript 'KH2012:KH.C12.696.v1...' >
- Transcript 'Moocci.CG.ELv1_2.S13...' >
- Transcript 'KH2012:KH.L173.5.v4....'
Transcript Model
Transcript Id
KH2012:KH.L173.5.v4.A.nonSL10-1
Possible name(s)
CTCF; CTCFL; ZNF501
Gene model
Location
KhL173 [44,923 / 51,480]
Amino acid sequence
Length: 568
>KH.L173.5.v4.A.nonSL10-1
SNFCSPTKGQCRVCFETKSKNLFQTGKNLAKSSYLLSFELEMADDGKDSVEVTSQIESVN
GTVAPPNDSIEPEENEVSEKNEEKIIEEVSNEAPAEAPVEDGTTTTVQFIAVSADEHARM
VTAGELPESVHGADVHMQIPGAEAQQVRLIAVDSNGVPVTESAILQAAAEQAGIVFITKD
DNGHDSQITIDQAMQLSMRENPPMITATTAAVVLEQKEKEVHQDTDGNDTEDESETKKPS
VRKPRLKLRVYSQKDGGVDEVATSFLDDGSLALTDEVETLEEKPNDESVYEFQRQRGTME
EWRDRECEIILKDILQTLKDEDPPTGGDTEQPSDVTMLDPTMFKKNSKRATDKSRDRRKI
YQCRECSFYSHRHSNLVRHMKIHTDERPYKCHLCERSFRTNTLLRNHINTHTGVKPYKCT
VDGCVMAFVTSGELTRHTRYIHTHEKPFRCTLCDYASVEISKLRRHFRSHTGERPYSCEE
CGKAFADSFHLKRHRMSHTGEKPYECPECNQRFTQRGSVKMHIMQQHTKTAPKFKCEICR
TLLGRKSDLNVHMRKQHAFQVIMMSLCW
Nucleotide sequence
Length: 1,708
>KH2012:KH.L173.5.v4.A.nonSL10-1
AAGTAATTTTTGTTCACCCACCAAAGGGCAGTGCCGGGTTTGTTTTGAAACTAAATCGAA
GAATTTATTTCAAACCGGGAAGAATTTGGCCAAAAGTTCATATTTATTGTCTTTTGAACT
TGAGATGGCAGATGATGGAAAAGATAGCGTTGAAGTAACTTCACAAATTGAGTCGGTTAA
CGGCACTGTAGCGCCACCCAATGACTCGATTGAGCCCGAGGAAAATGAAGTGTCGGAAAA
AAATGAAGAAAAAATTATTGAAGAAGTTTCGAATGAGGCTCCTGCCGAGGCCCCTGTGGA
AGATGGGACAACGACAACCGTTCAATTCATCGCTGTATCAGCTGATGAACATGCTCGTAT
GGTCACCGCTGGCGAGTTACCGGAGAGCGTGCATGGGGCCGACGTACATATGCAGATACC
AGGCGCTGAAGCACAACAAGTTCGATTAATCGCAGTAGACAGCAACGGTGTTCCCGTCAC
CGAGTCAGCGATACTGCAAGCAGCTGCGGAACAAGCGGGCATTGTTTTCATAACAAAGGA
CGACAATGGACATGATTCGCAGATAACTATTGACCAAGCCATGCAGTTGTCCATGAGGGA
GAACCCCCCCATGATAACGGCGACCACTGCAGCCGTCGTGCTCGAACAAAAAGAGAAAGA
AGTTCACCAGGATACCGATGGCAACGATACAGAAGACGAAAGCGAGACAAAGAAACCATC
GGTACGGAAACCACGATTGAAACTTCGCGTGTACAGTCAGAAGGACGGTGGAGTTGACGA
GGTGGCAACGTCGTTCCTCGATGACGGGAGCCTCGCTCTCACTGATGAAGTTGAAACTTT
GGAAGAAAAACCAAACGATGAATCAGTTTACGAGTTCCAGCGTCAGCGAGGAACAATGGA
AGAATGGAGAGACAGGGAATGTGAAATTATCTTGAAGGATATTTTACAAACATTGAAGGA
CGAGGATCCACCAACGGGTGGCGACACAGAGCAACCCAGTGATGTCACAATGCTTGACCC
AACCATGTTTAAAAAGAATTCGAAGCGAGCTACGGATAAAAGTCGCGACCGTCGTAAGAT
TTATCAGTGTCGGGAATGTTCGTTCTACAGCCATCGTCATAGTAACTTGGTTCGGCACAT
GAAGATCCACACCGATGAGCGACCTTATAAATGCCATCTTTGCGAACGATCGTTTCGTAC
GAACACATTACTTCGTAACCACATCAACACACATACAGGAGTGAAGCCGTACAAATGTAC
AGTTGATGGTTGTGTTATGGCATTCGTAACCAGTGGTGAGCTAACCCGACACACAAGGTA
CATTCACACCCACGAGAAACCTTTCCGATGCACGTTGTGCGATTATGCGAGCGTCGAAAT
CAGCAAACTACGCCGACATTTCCGTTCCCACACTGGGGAGCGACCTTATTCTTGCGAGGA
GTGTGGCAAAGCGTTTGCTGATAGTTTTCATTTGAAACGACATCGAATGTCGCACACCGG
TGAGAAACCTTACGAGTGTCCGGAATGTAACCAGCGTTTTACCCAGCGTGGTAGTGTGAA
GATGCATATCATGCAGCAACACACGAAGACGGCTCCGAAGTTTAAATGCGAGATTTGTCG
AACTTTGTTGGGAAGGAAAAGCGATTTAAATGTCCATATGCGGAAGCAACACGCTTTCCA
GGTGATTATGATGTCACTATGTTGGTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[359-411] 2.69E-13 - T[397-454] 9.86E-17 - T[461-513] 1.26E-20 - T[532-559] 3.24E-11 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[361-388] 13.36 - T[389-416] 14.336 - T[417-447] 13.63 - T[448-475] 13.38 - T[476-503] 17.308 - T[504-532] 12.175 - T[534-558] 8.954 |
| SMART |
Znf_C2H2_type (IPR013087) - T[361-383] 0.032 - T[389-411] 0.0054 - T[417-442] 0.0038 - T[448-470] 0.039 - T[476-498] 9.9E-4 - T[504-527] 6.3E-4 - T[534-557] 0.022 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[391-411] . - T[419-442] . - T[478-498] . - T[506-527] . - T[536-557] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CTCF_HUMAN | 64.322 % | 285 | 3.61E-87 |
| CTCFL_HUMAN | 53.556 % | 274 | 5.79E-84 |
| ZN501_HUMAN | 40.265 % | 161 | 1.17E-45 |