- Transcript 'KH2012:KH.C11.698.v1...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.L147.3.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S52...' >
- Transcript 'KH2012:KH.L173.5.v4....'
Transcript Model
Transcript Id
KH2012:KH.L173.5.v4.A.nonSL4-1
Possible name(s)
CTCF; CTCFL; ZNF501
Gene model
Location
KhL173 [44,972 / 51,480]
Amino acid sequence
Length: 552
>KH.L173.5.v4.A.nonSL4-1
TKSKNLFQTGKNLAKSSYLLSFELEMADDGKDSVEVTSQIESVNGTVAPPNDSIEPEENE
VSEKNEEKIIEEVSNEAPAEAPVEDGTTTTVQFIAVSADEHARMVTAGELPESVHGADVH
MQIPGAEAQQVRLIAVDSNGVPVTESAILQAAAEQAGIVFITKDDNGHDSQITIDQAMQL
SMRENPPMITATTAAVVLEQKEKEVHQDTDGNDTEDESETKKPSVRKPRLKLRVYSQKDG
GVDEVATSFLDDGSLALTDEVETLEEKPNDESVYEFQRQRGTMEEWRDRECEIILKDILQ
TLKDEDPPTGGDTEQPSDVTMLDPTMFKKNSKRATDKSRDRRKIYQCRECSFYSHRHSNL
VRHMKIHTDERPYKCHLCERSFRTNTLLRNHINTHTGVKPYKCTVDGCVMAFVTSGELTR
HTRYIHTHEKPFRCTLCDYASVEISKLRRHFRSHTGERPYSCEECGKAFADSFHLKRHRM
SHTGEKPYECPECNQRFTQRGSVKMHIMQQHTKTAPKFKCEICRTLLGRKSDLNVHMRKQ
HAFQVIMMSLCW
Nucleotide sequence
Length: 1,659
>KH2012:KH.L173.5.v4.A.nonSL4-1
ACTAAATCGAAGAATTTATTTCAAACCGGGAAGAATTTGGCCAAAAGTTCATATTTATTG
TCTTTTGAACTTGAGATGGCAGATGATGGAAAAGATAGCGTTGAAGTAACTTCACAAATT
GAGTCGGTTAACGGCACTGTAGCGCCACCCAATGACTCGATTGAGCCCGAGGAAAATGAA
GTGTCGGAAAAAAATGAAGAAAAAATTATTGAAGAAGTTTCGAATGAGGCTCCTGCCGAG
GCCCCTGTGGAAGATGGGACAACGACAACCGTTCAATTCATCGCTGTATCAGCTGATGAA
CATGCTCGTATGGTCACCGCTGGCGAGTTACCGGAGAGCGTGCATGGGGCCGACGTACAT
ATGCAGATACCAGGCGCTGAAGCACAACAAGTTCGATTAATCGCAGTAGACAGCAACGGT
GTTCCCGTCACCGAGTCAGCGATACTGCAAGCAGCTGCGGAACAAGCGGGCATTGTTTTC
ATAACAAAGGACGACAATGGACATGATTCGCAGATAACTATTGACCAAGCCATGCAGTTG
TCCATGAGGGAGAACCCCCCCATGATAACGGCGACCACTGCAGCCGTCGTGCTCGAACAA
AAAGAGAAAGAAGTTCACCAGGATACCGATGGCAACGATACAGAAGACGAAAGCGAGACA
AAGAAACCATCGGTACGGAAACCACGATTGAAACTTCGCGTGTACAGTCAGAAGGACGGT
GGAGTTGACGAGGTGGCAACGTCGTTCCTCGATGACGGGAGCCTCGCTCTCACTGATGAA
GTTGAAACTTTGGAAGAAAAACCAAACGATGAATCAGTTTACGAGTTCCAGCGTCAGCGA
GGAACAATGGAAGAATGGAGAGACAGGGAATGTGAAATTATCTTGAAGGATATTTTACAA
ACATTGAAGGACGAGGATCCACCAACGGGTGGCGACACAGAGCAACCCAGTGATGTCACA
ATGCTTGACCCAACCATGTTTAAAAAGAATTCGAAGCGAGCTACGGATAAAAGTCGCGAC
CGTCGTAAGATTTATCAGTGTCGGGAATGTTCGTTCTACAGCCATCGTCATAGTAACTTG
GTTCGGCACATGAAGATCCACACCGATGAGCGACCTTATAAATGCCATCTTTGCGAACGA
TCGTTTCGTACGAACACATTACTTCGTAACCACATCAACACACATACAGGAGTGAAGCCG
TACAAATGTACAGTTGATGGTTGTGTTATGGCATTCGTAACCAGTGGTGAGCTAACCCGA
CACACAAGGTACATTCACACCCACGAGAAACCTTTCCGATGCACGTTGTGCGATTATGCG
AGCGTCGAAATCAGCAAACTACGCCGACATTTCCGTTCCCACACTGGGGAGCGACCTTAT
TCTTGCGAGGAGTGTGGCAAAGCGTTTGCTGATAGTTTTCATTTGAAACGACATCGAATG
TCGCACACCGGTGAGAAACCTTACGAGTGTCCGGAATGTAACCAGCGTTTTACCCAGCGT
GGTAGTGTGAAGATGCATATCATGCAGCAACACACGAAGACGGCTCCGAAGTTTAAATGC
GAGATTTGTCGAACTTTGTTGGGAAGGAAAAGCGATTTAAATGTCCATATGCGGAAGCAA
CACGCTTTCCAGGTGATTATGATGTCACTATGTTGGTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[343-395] 2.55E-13 - T[381-438] 9.37E-17 - T[445-497] 1.18E-20 - T[516-543] 3.03E-11 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[345-372] 13.36 - T[373-400] 14.336 - T[401-431] 13.63 - T[432-459] 13.38 - T[460-487] 17.308 - T[488-516] 12.175 - T[518-542] 8.954 |
| SMART |
Znf_C2H2_type (IPR013087) - T[345-367] 0.032 - T[373-395] 0.0054 - T[401-426] 0.0038 - T[432-454] 0.039 - T[460-482] 9.9E-4 - T[488-511] 6.3E-4 - T[518-541] 0.022 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[375-395] . - T[403-426] . - T[462-482] . - T[490-511] . - T[520-541] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CTCF_HUMAN | 64.322 % | 285 | 1.13E-87 |
| CTCFL_HUMAN | 53.556 % | 275 | 2.02E-84 |
| ZN501_HUMAN | 40.265 % | 162 | 8.12E-46 |