- Clone 'cijv031c07' >
- Clone 'cima841l24' >
- Transcript 'KH2012:KH.C10.87.v1....' >
- Transcript 'KH2012:KH.L4.17.v3.A...' >
- Transcript 'KH2012:KH.L18.9.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.L18.9.v1.A.ND2-1
Possible name(s)
PRDM9; ZNF768; ZSCAN22
Gene model
Location
KhL18 [356,521 / 360,082]
Amino acid sequence
Length: 521
>KH.L18.9.v1.A.ND2-1
RPLTFYLSFAEGYFILFGKVMVKKSIVSLGKSHQAVVQYFKCYASVFEHDIAAISSLLQR
KNIRKASYHSWPDANNQKVVWSLTLNDNSDIKTTIRELDDFKEERRLVSRAAALELLLLE
SDIHFSDNNMVFTSTSSSPILTQLRKFRKEKRFCDFTINLDGKSFAVHKLLLVASSNYFC
EIIKDNQTSVDIGGIKAEIFETMLCYIYAEDVAVNESNIFELKENASLYELQGLVDMCML
FQDFVGAVTKIPEIKLDSLPEAKSAIGNKKPGETESMVHVRKSERQAKREAYNTISKTIN
LVEEPDDISTDDRFLPVTEENHVLPQKENIENHNRTHSVEVTKSQVEQIDNVSMLELQAA
SVPFVLKCEICHVELEDQKQRKAHMKKHFVQNQPNRFGCHLCMKAFRSASHLKRHMISHT
GIRKHCCTTCGKLFLKSDHLKRHERTHTSERPFTCEQCGKQFRDKDHLKRHNLTHTEERP
YFCEVCGKQFKDKSTLLSHQKSHNANNSVVCGVCGRCKLFV
Nucleotide sequence
Length: 1,587
>KH2012:KH.L18.9.v1.A.ND2-1
AATTACCGCGATAGATTTTAAAGACCGTTGACATTTTATTTATCTTTTGCAGAAGGCTAT
TTTATATTATTTGGTAAAGTCATGGTAAAGAAAAGTATCGTGTCACTTGGAAAGTCACAT
CAGGCTGTTGTTCAATATTTCAAATGCTATGCATCTGTATTTGAGCATGATATTGCAGCT
ATTTCATCACTTCTGCAAAGGAAAAATATAAGAAAGGCCTCCTACCATAGCTGGCCAGAT
GCAAACAACCAGAAAGTGGTTTGGTCGTTAACATTGAATGACAACTCAGATATCAAAACC
ACAATAAGGGAATTGGATGATTTTAAAGAAGAGCGAAGATTGGTTAGTCGGGCAGCTGCC
TTAGAATTGCTGTTGTTAGAATCAGATATTCACTTCAGTGACAACAACATGGTTTTCACA
TCAACTTCTTCATCACCAATTCTCACACAACTAAGGAAATTTCGAAAAGAAAAAAGATTT
TGTGACTTTACTATTAATTTAGATGGTAAAAGTTTTGCTGTCCATAAACTGCTGTTGGTT
GCTTCTTCAAACTATTTCTGTGAAATCATAAAAGACAACCAGACCTCAGTAGATATTGGT
GGAATAAAGGCAGAAATATTTGAAACAATGTTGTGTTACATTTATGCTGAAGATGTGGCT
GTTAATGAATCAAATATCTTCGAGCTTAAAGAAAATGCAAGCCTTTATGAACTGCAGGGA
TTGGTGGATATGTGCATGTTGTTTCAAGATTTCGTAGGAGCAGTGACAAAAATTCCAGAG
ATCAAATTGGACTCTCTTCCAGAAGCAAAATCAGCCATTGGAAATAAGAAACCTGGAGAA
ACAGAATCTATGGTCCATGTGAGGAAAAGTGAGAGGCAAGCTAAACGAGAAGCATATAAC
ACTATAAGCAAAACAATAAACCTGGTGGAAGAGCCCGATGACATCAGTACAGATGACAGA
TTTTTACCAGTGACAGAAGAAAATCATGTTTTACCACAAAAAGAAAACATTGAAAATCAT
AACAGGACACACAGTGTAGAAGTGACAAAGTCGCAAGTTGAACAAATTGACAATGTTTCC
ATGCTGGAATTACAAGCAGCAAGTGTTCCTTTTGTTCTGAAATGTGAGATCTGCCATGTT
GAGTTGGAAGATCAAAAACAGAGGAAAGCCCACATGAAGAAACACTTCGTGCAGAATCAA
CCGAATAGATTTGGATGCCATCTTTGTATGAAAGCTTTTCGAAGTGCAAGTCACCTAAAG
AGACATATGATATCACACACAGGTATCCGAAAACATTGCTGTACAACGTGTGGAAAACTA
TTTTTGAAGTCTGATCACTTGAAGCGGCACGAACGTACGCATACCAGTGAACGACCATTC
ACTTGTGAGCAGTGTGGAAAACAATTTAGAGATAAAGATCATTTAAAAAGGCACAATTTA
ACGCATACTGAGGAGAGACCTTACTTCTGTGAGGTGTGTGGAAAGCAATTTAAAGATAAA
AGTACTTTACTCAGCCACCAGAAAAGCCACAATGCTAATAACTCTGTGGTTTGTGGTGTT
TGTGGCAGATGTAAGTTATTTGTGTGA
| SUPERFAMILY |
SKP1/BTB/POZ_sf (IPR011333) - T[131-239] 5.49E-24 |
| Pfam |
BTB/POZ_dom (IPR000210) - T[145-241] 8.0E-20 |
| ProSiteProfiles |
BTB/POZ_dom (IPR000210) - T[154-216] 16.032 |
| SMART |
BTB/POZ_dom (IPR000210) - T[154-246] 7.3E-17 |
| SMART |
Znf_C2H2_type (IPR013087) - T[366-388] 0.54 - T[397-419] 0.03 - T[425-447] 2.1 - T[453-475] 6.7E-4 - T[481-503] 3.0E-4 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[367-419] 7.62E-5 - T[405-462] 4.82E-18 - T[451-503] 5.77E-17 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[397-424] 12.819 - T[425-452] 15.459 - T[453-480] 15.895 - T[481-508] 13.048 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[399-419] . - T[426-447] . - T[455-475] . - T[483-503] . |
| Pfam |
Znf_C2H2_jaz (IPR022755) - T[481-503] 3.8E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZSC22_HUMAN | 35.26 % | 128 | 4.88E-32 |
| PRDM9_HUMAN | 49.153 % | 132 | 1.6E-32 |
| ZN768_HUMAN | 45 % | 125 | 7.75E-31 |