- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.L18.18.v3....' >
- Transcript 'KH2012:KH.L20.10.v1....'
Transcript Model
Transcript Id
KH2012:KH.L20.10.v1.R.ND1-1
Possible name(s)
VPS36
Gene model
Location
KhL20 [381,269 / 385,352]
Amino acid sequence
Length: 304
>KH.L20.10.v1.R.ND1-1
NSAYIKMDRFIWSNRGIEAGETKLFSQVGVRIYDGDQKTSYDDGNINLTSHKLTWIDSSN
SQVCISLHLSLAVFCERHAGGIGKSAKVSLHLQAVPTNKPPGPVARSSHGFVRFAFKHGG
DVEFTHKMQQAIHFKSYLLSLGIPNPVTKQTHGSGTHYHQQLAHEVSKSLAPQIDKAGGM
ILLTDAYCRINRARGMELLSPEDLLNACRMLTHLNLSIKLRQFDTGVMVLQSDSHSDEKV
TQQTTQLVTDSTSLSSEELASIVDISVLLAKERLLLSETSGLLCRDDSDQGLRFFPNLFA
SKAA
Nucleotide sequence
Length: 1,454
>KH2012:KH.L20.10.v1.R.ND1-1
AATAGGCAAATGTTCAAATATGTTGTATTTAATTTGTGCTGTTGTCATTATTTTACCCGT
TGAAGTTATCGTCCAATTTCCAAATGTCTTTACTCCAAAATAAACTGAAAACGAAGTGAC
TATCGCAGCTAAATCCATGTTAAAATTCTGCATATATTAAAATGGATCGTTTTATTTGGT
CTAATCGTGGAATTGAAGCTGGAGAAACGAAGTTATTTAGCCAAGTTGGCGTCCGAATTT
ACGATGGCGATCAAAAAACGAGCTATGATGACGGCAACATTAACCTCACTTCACATAAAC
TAACATGGATAGACAGCAGTAATTCACAAGTCTGTATTTCTTTACATCTGAGTCTTGCCG
TGTTCTGTGAAAGGCACGCAGGGGGGATCGGGAAAAGTGCGAAAGTATCCTTACACTTGC
AAGCTGTGCCCACCAACAAACCCCCCGGCCCTGTAGCCCGTAGTTCACATGGGTTCGTAA
GGTTTGCTTTCAAACATGGTGGGGACGTCGAGTTTACTCATAAGATGCAACAAGCCATAC
ATTTCAAATCTTACTTATTAAGCCTTGGTATTCCCAACCCTGTGACCAAACAAACCCATG
GTTCCGGTACCCACTACCACCAACAACTAGCACATGAGGTGTCCAAGTCATTAGCTCCAC
AGATTGATAAAGCTGGTGGGATGATCCTACTCACAGATGCTTACTGTAGGATCAATAGAG
CTCGTGGTATGGAGCTTCTATCACCTGAAGATCTCCTCAACGCTTGTCGTATGCTTACCC
ACCTCAACCTGTCAATCAAACTCCGTCAGTTCGACACAGGGGTGATGGTTCTACAATCAG
ACTCGCATAGTGATGAGAAAGTAACTCAGCAAACCACTCAACTGGTAACCGACAGTACGA
GCCTTAGTTCCGAGGAGCTTGCATCTATCGTAGATATCTCCGTCCTCCTCGCTAAAGAAC
GTCTTCTTCTCTCGGAAACATCCGGACTCCTATGCAGAGATGATTCGGATCAAGGACTTC
GATTTTTCCCTAACCTTTTCGCTTCAAAAGCTGCTTGAGGAAGTTTTCTATTTTTTCTTT
CTCCAACTTAAACTCTTTTCGAGGAAAAAATACTTATTTTCTTGCGAATCTTTTGCTATC
TTAGTTTTGGAAAAAACTTTCTGGGCTCCTCTTTTTTGCTGGAAATATTTTCTTTGAACA
TGCAAATGTTACTTCTAGACAAAAAGGTACAAATATTCTGCACTTCCAATAGAAAGCTTT
TATTTTTATTTCTGACATCACTGAAGATTCCTAAGCAGATTGGAAACATCCGTTTCTGGG
AGTTCCTCTTGCTTAAAATGCTTTCTGATGAAACAACTTTCTTGCAAGAAACAAAAATGC
TCCTTATTTTTATCCCACTCCTAAGCATGTTGCTGCATCTCTATCTTACTTGGTGTTACG
GCTACAACTTACTT
| Gene3D |
PH-like_dom_sf (IPR011993) - T[5-140] 2.7E-43 |
| ProSiteProfiles |
GLUE_dom (IPR021648) - T[7-144] 17.042 |
| Pfam |
GLUE_dom (IPR021648) - T[13-93] 5.4E-14 |
| PANTHER |
Vps36 (IPR037855) - T[17-132] 3.7E-95 - T[129-301] 3.7E-95 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[154-232] 1.4E-31 - T[234-303] 4.0E-26 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[194-300] 7.53E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS36_HUMAN | 56.322 % | 214 | 4.02E-67 |