- Transcript 'KH2012:KH.L40.23.v1....' >
- Transcript 'KH2012:KH.C8.635.v1....' >
- Transcript 'Cisavi.CG.ENS81.R88....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.L25.17.v1....'
Transcript Model
Transcript Id
KH2012:KH.L25.17.v1.A.SL2-1
Possible name(s)
ABCA9; ABCE1; ABCF3
Gene model
Location
KhL25 [125,419 / 128,727]
Amino acid sequence
Length: 602
>KH.L25.17.v1.A.SL2-1
IKMSDSNTRIAIVNNDKCKPKRCRQECRKSCPVVRMGKLCIEVTPLSKLAWISEELCIGC
GICVKKCPFEAISIINLPSNLEKDTTHRYSANSFKLHRLPIPRAGEVLGLVGTNGIGKST
ALKILAGKQKPNLGSYDEPPDWTEILSYFRGSELQNYFTKILEDDMKAVIKPQYVDQIPK
AVKGTVQAMLDRKDDSGTQEEFCGLLDLNHVLTRKIEDLSGGELQRFAIAVVCIQKADVY
MFDEPSSYLDVKQRLNAAVAIRNLLGTTNYVIVVEHDLSVLDYLSDFICCLYGVPGAYGV
VTMPSSVREGINIFLDGFVPSENLRFRDSSLVFKVSETAEGEEDVKKMCRYSYGDMMKKL
GDFELTVKGGEFTDSEIVVMLGENGTGKTTFIRMLAGKLAPDAGNKVPSLNISYKPQKIS
PKSTGTVRQLLHEKIRSAYVHPQFITDVMKPMMMDNIIDQEIQNLSGGELQRVAIALCLG
KPADVYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFSG
RPSIETTANHPQPLLSGMNSFLESLEITFRRDPNNFRPRINKLNSVKDAAQKKSGQYFFM
ED
Nucleotide sequence
Length: 2,254
>KH2012:KH.L25.17.v1.A.SL2-1
TTCAATTTTCAGCTTCGCTTATTTAGATAAAAATGTCTGACTCCAACACCCGTATTGCGA
TCGTTAATAACGACAAATGTAAACCTAAACGATGCCGGCAAGAATGTCGGAAATCTTGCC
CTGTCGTCCGAATGGGAAAACTTTGTATTGAAGTGACCCCACTTTCCAAGTTAGCCTGGA
TATCCGAAGAGTTATGCATAGGTTGTGGTATCTGCGTCAAAAAATGTCCGTTCGAAGCGA
TTTCTATCATTAATCTACCTAGCAACTTGGAGAAGGACACGACGCACAGGTACAGCGCAA
ATTCGTTCAAACTTCATCGACTACCGATCCCTAGGGCAGGAGAAGTGCTCGGTTTGGTCG
GGACGAATGGAATCGGAAAATCTACTGCTTTAAAAATCCTCGCTGGGAAACAGAAGCCAA
ACTTAGGAAGTTACGACGAACCACCAGACTGGACAGAGATCTTGAGTTACTTCCGCGGTT
CAGAGTTACAGAATTACTTCACCAAGATTTTGGAAGATGATATGAAAGCTGTTATAAAAC
CACAATATGTGGATCAGATACCAAAGGCTGTTAAAGGTACAGTGCAGGCTATGCTGGATC
GTAAGGATGACTCTGGAACTCAGGAAGAGTTTTGTGGACTCCTGGATCTAAACCATGTTC
TTACACGGAAGATAGAAGATTTATCCGGAGGGGAGTTGCAACGATTCGCGATTGCTGTTG
TCTGCATCCAAAAAGCGGACGTTTATATGTTTGATGAGCCGTCTTCGTACTTAGACGTCA
AGCAACGCTTAAACGCTGCTGTTGCGATCAGGAATCTTTTGGGGACGACAAACTATGTGA
TTGTTGTTGAGCATGATTTAAGTGTGTTGGATTATTTGTCCGATTTCATTTGCTGCTTGT
ATGGTGTACCTGGTGCTTACGGTGTCGTGACTATGCCAAGTTCCGTGCGGGAAGGAATCA
ATATTTTCTTGGATGGGTTCGTGCCATCCGAGAATCTACGTTTCCGAGACAGCTCGCTGG
TTTTTAAAGTCTCGGAGACGGCAGAAGGAGAAGAGGACGTGAAGAAAATGTGCAGATACT
CCTATGGAGACATGATGAAAAAACTTGGAGATTTTGAACTCACAGTGAAAGGAGGAGAAT
TCACCGACTCTGAGATCGTGGTCATGCTGGGGGAAAACGGGACGGGGAAGACGACTTTCA
TTCGAATGCTCGCTGGGAAGTTGGCTCCAGACGCTGGGAATAAAGTTCCATCACTCAACA
TTAGTTACAAACCTCAGAAGATTAGTCCAAAGTCCACAGGCACTGTCCGTCAATTGCTTC
ACGAGAAGATCCGGAGCGCTTACGTTCACCCACAATTCATCACAGATGTAATGAAACCAA
TGATGATGGATAATATTATCGATCAGGAGATACAGAATTTATCAGGAGGTGAACTACAAC
GGGTGGCAATTGCTTTGTGTCTTGGTAAACCTGCCGATGTTTATTTGATTGATGAACCGT
CGGCTTATCTTGATTCCGAGCAACGTATTGTTGCAGCAAAGGTTATCAAACGTTTCATTC
TCCACGCCAAGAAAACAGCATTTGTTGTGGAGCACGATTTTATAATGGCAACTTACTTAG
CGGACCGTGTGATTGTATTCAGCGGTCGTCCATCAATAGAAACAACAGCAAATCACCCCC
AACCTTTACTATCGGGCATGAACAGTTTCTTGGAGTCGTTAGAAATCACTTTCCGACGAG
ACCCGAATAACTTTCGTCCACGAATTAACAAGCTTAACTCGGTAAAGGACGCGGCACAGA
AGAAGTCCGGCCAGTATTTCTTTATGGAGGATTAGAAAATCTAATTTTGTATTTATTTTT
TAAGTTCATGGCAAAAAGAATGACAGAGTAAAAAATAAGTAAAAACATCCATTTTTTCGG
GAAAAAATTACTGAAATAATTCTTTTGCTGTAAAGTGTCCATTGTGTTAAAAACATTGCC
TAAAAAATTACTAAATGTATTTTTGCTGTAAAATGTCGTTTTTTCTTTTTTGTTGTTTGA
AGAAAATTTGAGTATCTCGGTTTCTAAAGAATAATTTTGCAGTTTTGACTATTTGTTCAA
CGTAAATAAGTTTGGGTGTTGGATGTTAATTGCAGATAATATATATATATATGTGTGTGT
GTGTGTGTGGGAATGAAGGTTGAACTGTGTGCTTGTTATGACAAAATTTGGTTTGGAAAA
CCGGTGAATAAATGAGATAATGTTGCTGGTAAAA
| PANTHER |
RLI1 (IPR013283) - T[3-602] 0.0 |
| Pfam |
RNaseL-inhib_metal-bd_dom (IPR007209) - T[8-39] 6.1E-13 |
| ProSiteProfiles |
4Fe4S_Fe-S-bd (IPR017896) - T[9-39] 6.475 - T[48-77] 10.768 |
| PRINTS |
RLI1 (IPR013283) - T[26-41] 5.3E-73 - T[54-78] 5.3E-73 - T[81-101] 5.3E-73 - T[109-134] 5.3E-73 - T[142-158] 5.3E-73 - T[158-184] 5.3E-73 |
| Pfam |
4Fe4S_Fe-S-bd (IPR017896) - T[51-73] 1.1E-8 |
| ProSitePatterns |
4Fe4S_Fe_S_CS (IPR017900) - T[57-68] . |
| CDD |
RLI_dom_1 (IPR034348) - T[80-334] 3.20273E-168 |
| ProSiteProfiles |
ABC_transporter-like (IPR003439) - T[81-317] 12.378 - T[340-565] 14.999 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[103-293] 5.63E-30 - T[354-538] 9.16E-34 |
| Pfam |
ABC_transporter-like (IPR003439) - T[104-246] 3.2E-16 - T[372-493] 1.3E-18 |
| SMART |
AAA+_ATPase (IPR003593) - T[104-295] 2.1E-7 - T[374-543] 6.0E-12 |
| ProSitePatterns |
ABC_transporter_CS (IPR017871) - T[465-479] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ABCE1_HUMAN | 80.833 % | 1033 | 0 |