- Transcript 'KH2012:KH.S363.1.v1....' >
- Transcript 'KH2012:KH.L31.3.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.L31.3.v2.A.SL4-1
Possible name(s)
TRIM54; TRIM55; TRIM63
Gene model
Location
KhL31 [3,401 / 9,732]
Amino acid sequence
Length: 442
>KH.L31.3.v2.A.SL4-1
SKKVVNYLINVMDALRLMGGAAGPNPEEIERLLMCPICLEIYTKPVVILPCQHNLCRKCA
NDVFQNRGTPMGSGGRFRCPTCRYEVVLDRHGVYGLQRNLLVENIIDMYQTEGRKPTFKT
SEVVMCDQHEEEKVNIYCVTCQKPTCSLCKVFGDHQTCNVSPMEKIYKEQKSEISDSIAL
LVAGNDRLQAIISQTEELGKMAECNGRKVKSDLCAAFDKLYAVLEQRKTDMMNRITSDVQ
ERSQVIKEMLKSYGLQLESASKLMEASLALVEERSVPVFLTQARETINKIKATSRDSEVR
KPPFKIQDMDEFTVDFNNHETALYKLDFSALQVCDATTNDNNETNDDETANQSEGATSNT
ADNDDDSEEEYDVTVEDDVGDSDATSVTSRSDVGSSYSGARSNNEATGRSQSPSSSRNNG
SSSGATESSEARRPLEERSSWW
Nucleotide sequence
Length: 1,963
>KH2012:KH.L31.3.v2.A.SL4-1
ATAAAATCAAAAAAATCTAATCCAAAAAAGTTGTTAATTATTTAATTAACGTCATGGATG
CGCTTCGTTTGATGGGAGGGGCGGCTGGGCCGAATCCCGAAGAAATTGAACGGCTTCTGA
TGTGTCCAATATGTCTTGAAATCTACACCAAGCCCGTTGTTATTCTCCCCTGCCAGCATA
ACTTGTGCAGGAAATGCGCCAACGATGTGTTTCAGAACAGGGGAACTCCCATGGGGTCGG
GCGGGAGATTCAGGTGTCCTACGTGTCGTTACGAAGTTGTATTGGACCGACATGGAGTCT
ACGGCTTGCAGAGAAACCTACTTGTTGAGAATATTATTGACATGTATCAAACAGAAGGGA
GAAAACCAACTTTCAAAACTTCAGAGGTTGTAATGTGCGACCAACATGAAGAAGAGAAAG
TGAATATTTACTGCGTGACTTGTCAGAAACCAACGTGTTCTCTGTGCAAAGTATTTGGGG
ACCATCAGACGTGTAATGTCTCGCCTATGGAGAAAATATACAAGGAACAAAAGAGTGAAA
TATCTGACTCTATAGCACTCCTAGTGGCAGGAAATGATCGTCTTCAAGCAATTATTTCAC
AAACAGAAGAGCTTGGAAAAATGGCCGAATGTAACGGTCGTAAAGTGAAAAGTGATTTAT
GCGCTGCGTTTGACAAACTTTACGCCGTGTTGGAGCAACGTAAGACTGATATGATGAATC
GAATAACTTCTGATGTTCAAGAAAGAAGTCAGGTTATAAAAGAAATGTTAAAATCTTACG
GTCTTCAACTTGAGTCAGCAAGCAAGTTAATGGAAGCTTCACTTGCGTTGGTTGAGGAAC
GAAGCGTTCCTGTGTTTCTTACACAAGCGAGGGAGACAATTAATAAAATCAAAGCCACAA
GTCGAGACTCCGAGGTCAGGAAGCCTCCGTTTAAAATACAAGACATGGACGAGTTCACCG
TTGATTTCAACAATCACGAAACTGCGCTTTATAAACTTGACTTCTCAGCTTTGCAGGTTT
GTGACGCAACAACGAACGATAATAACGAAACAAACGATGATGAAACCGCCAACCAATCAG
AAGGCGCCACATCAAACACAGCTGACAACGATGACGATTCAGAAGAGGAGTATGACGTCA
CAGTGGAAGATGACGTGGGCGATTCTGACGCAACATCTGTGACGTCACGAAGTGACGTAG
GCAGCAGCTACAGCGGAGCAAGATCTAACAATGAAGCAACCGGTCGCAGCCAATCACCTT
CAAGCTCACGTAACAACGGTTCGTCAAGTGGCGCCACAGAGTCGAGTGAAGCAAGACGGC
CACTAGAGGAGAGAAGCAGTTGGTGGTAACCATGGTTACATTACGTCACTTCCTCTCTGC
ATGCTGCTCATACGTCATCAACATCAGCTACGTCATCATACAATATCTCATTTCATGACG
CCATAATCATTGCTCTTCAATCGCTCGCTTCCGTCACTGTTTATTACGTCATATTATTAC
TTACGCAATATTGCACCCGGGACCTTCTGGTACGCAGCCCCCCCTTTATTAATTAATCAA
ATCGTTCTGTTACGCTTTGGTGACAACGTACTATAAAACGTACACCCAAGCATTACACTA
ATCAAGTCGCATTAACTCCTAACCAAAGCGTAACCGAGCGGTTTGATTGGTTATAAACGA
GCTGGCTGCGTAGGAGGCTGTGTTTTGGATATTTAGATCATTCTGTCTTATGTGAAAGCG
TTAGATTCGCACAATAAGGTTGCCAGGTATCGCCAAGTATCTTAATGGCCAACGAGTAAA
GATTAAAAAGGCTTTGCCGTGCATTGGTTTTCAAAGTGATTATATAACTAGTTGCTTACC
GAGTGTGTGTTTAATTGCAGTTACCGCTTTTTGTTAATTGCTTGAACATTATTTGATTGC
TCATCGCTTCATACGTTTGCATTACACATATGCTTGTTAGTGA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[10-112] 3.2E-19 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[35-83] 12.386 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[35-80] 1.4E-10 |
| SMART |
Znf_RING (IPR001841) - T[35-82] 1.3E-8 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[51-60] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[121-163] 11.832 |
| SMART |
Znf_B-box (IPR000315) - T[121-163] 6.0E-7 |
| Pfam |
Znf_B-box (IPR000315) - T[122-157] 1.2E-6 |
| CDD |
Znf_B-box (IPR000315) - T[124-163] 4.04141E-7 |
| ProSiteProfiles |
COS_domain (IPR017903) - T[271-329] 14.399 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI54_HUMAN | 52.427 % | 341 | 5.4E-115 |
| TRI63_HUMAN | 47.284 % | 320 | 3.56E-107 |
| TRI55_HUMAN | 50.974 % | 338 | 2.15E-111 |