- Transcript 'KH2012:KH.L31.3.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.L31.3.v2.A.SL5-1
Possible name(s)
TRIM54; TRIM55; TRIM63
Gene model
Location
KhL31 [3,431 / 9,732]
Amino acid sequence
Length: 438
>KH.L31.3.v2.A.SL5-1
VNYLINVMDALRLMGGAAGPNPEEIERLLMCPICLEIYTKPVVILPCQHNLCRKCANDVF
QNRGTPMGSGGRFRCPTCRYEVVLDRHGVYGLQRNLLVENIIDMYQTEGRKPTFKTSEVV
MCDQHEEEKVNIYCVTCQKPTCSLCKVFGDHQTCNVSPMEKIYKEQKSEISDSIALLVAG
NDRLQAIISQTEELGKMAECNGRKVKSDLCAAFDKLYAVLEQRKTDMMNRITSDVQERSQ
VIKEMLKSYGLQLESASKLMEASLALVEERSVPVFLTQARETINKIKATSRDSEVRKPPF
KIQDMDEFTVDFNNHETALYKLDFSALQVCDATTNDNNETNDDETANQSEGATSNTADND
DDSEEEYDVTVEDDVGDSDATSVTSRSDVGSSYSGARSNNEATGRSQSPSSSRNNGSSSG
ATESSEARRPLEERSSWW
Nucleotide sequence
Length: 1,933
>KH2012:KH.L31.3.v2.A.SL5-1
TTGTTAATTATTTAATTAACGTCATGGATGCGCTTCGTTTGATGGGAGGGGCGGCTGGGC
CGAATCCCGAAGAAATTGAACGGCTTCTGATGTGTCCAATATGTCTTGAAATCTACACCA
AGCCCGTTGTTATTCTCCCCTGCCAGCATAACTTGTGCAGGAAATGCGCCAACGATGTGT
TTCAGAACAGGGGAACTCCCATGGGGTCGGGCGGGAGATTCAGGTGTCCTACGTGTCGTT
ACGAAGTTGTATTGGACCGACATGGAGTCTACGGCTTGCAGAGAAACCTACTTGTTGAGA
ATATTATTGACATGTATCAAACAGAAGGGAGAAAACCAACTTTCAAAACTTCAGAGGTTG
TAATGTGCGACCAACATGAAGAAGAGAAAGTGAATATTTACTGCGTGACTTGTCAGAAAC
CAACGTGTTCTCTGTGCAAAGTATTTGGGGACCATCAGACGTGTAATGTCTCGCCTATGG
AGAAAATATACAAGGAACAAAAGAGTGAAATATCTGACTCTATAGCACTCCTAGTGGCAG
GAAATGATCGTCTTCAAGCAATTATTTCACAAACAGAAGAGCTTGGAAAAATGGCCGAAT
GTAACGGTCGTAAAGTGAAAAGTGATTTATGCGCTGCGTTTGACAAACTTTACGCCGTGT
TGGAGCAACGTAAGACTGATATGATGAATCGAATAACTTCTGATGTTCAAGAAAGAAGTC
AGGTTATAAAAGAAATGTTAAAATCTTACGGTCTTCAACTTGAGTCAGCAAGCAAGTTAA
TGGAAGCTTCACTTGCGTTGGTTGAGGAACGAAGCGTTCCTGTGTTTCTTACACAAGCGA
GGGAGACAATTAATAAAATCAAAGCCACAAGTCGAGACTCCGAGGTCAGGAAGCCTCCGT
TTAAAATACAAGACATGGACGAGTTCACCGTTGATTTCAACAATCACGAAACTGCGCTTT
ATAAACTTGACTTCTCAGCTTTGCAGGTTTGTGACGCAACAACGAACGATAATAACGAAA
CAAACGATGATGAAACCGCCAACCAATCAGAAGGCGCCACATCAAACACAGCTGACAACG
ATGACGATTCAGAAGAGGAGTATGACGTCACAGTGGAAGATGACGTGGGCGATTCTGACG
CAACATCTGTGACGTCACGAAGTGACGTAGGCAGCAGCTACAGCGGAGCAAGATCTAACA
ATGAAGCAACCGGTCGCAGCCAATCACCTTCAAGCTCACGTAACAACGGTTCGTCAAGTG
GCGCCACAGAGTCGAGTGAAGCAAGACGGCCACTAGAGGAGAGAAGCAGTTGGTGGTAAC
CATGGTTACATTACGTCACTTCCTCTCTGCATGCTGCTCATACGTCATCAACATCAGCTA
CGTCATCATACAATATCTCATTTCATGACGCCATAATCATTGCTCTTCAATCGCTCGCTT
CCGTCACTGTTTATTACGTCATATTATTACTTACGCAATATTGCACCCGGGACCTTCTGG
TACGCAGCCCCCCCTTTATTAATTAATCAAATCGTTCTGTTACGCTTTGGTGACAACGTA
CTATAAAACGTACACCCAAGCATTACACTAATCAAGTCGCATTAACTCCTAACCAAAGCG
TAACCGAGCGGTTTGATTGGTTATAAACGAGCTGGCTGCGTAGGAGGCTGTGTTTTGGAT
ATTTAGATCATTCTGTCTTATGTGAAAGCGTTAGATTCGCACAATAAGGTTGCCAGGTAT
CGCCAAGTATCTTAATGGCCAACGAGTAAAGATTAAAAAGGCTTTGCCGTGCATTGGTTT
TCAAAGTGATTATATAACTAGTTGCTTACCGAGTGTGTGTTTAATTGCAGTTACCGCTTT
TTGTTAATTGCTTGAACATTATTTGATTGCTCATCGCTTCATACGTTTGCATTACACATA
TGCTTGTTAGTGA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[13-108] 3.5E-19 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[31-79] 12.386 |
| SMART |
Znf_RING (IPR001841) - T[31-78] 1.3E-8 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[31-76] 1.4E-10 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[47-56] . |
| SMART |
Znf_B-box (IPR000315) - T[117-159] 6.0E-7 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[117-159] 11.832 |
| Pfam |
Znf_B-box (IPR000315) - T[118-153] 1.2E-6 |
| CDD |
Znf_B-box (IPR000315) - T[120-159] 4.54982E-7 |
| ProSiteProfiles |
COS_domain (IPR017903) - T[267-325] 14.399 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI54_HUMAN | 52.427 % | 341 | 4.42E-115 |
| TRI63_HUMAN | 47.284 % | 320 | 4.37E-107 |
| TRI55_HUMAN | 50.974 % | 338 | 2.41E-111 |