Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL13-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,270 / 22,241]

Sequences

Amino acid sequence

Length: 313

>KH.L38.16.v1.A.nonSL13-1
LFLIILKLVYDNLDKTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAE
GVAALTLSAKSVGRLESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIK
WLLETYRGVYISVQYNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSI
KNANSQAEIPRFSVRGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDG
FAKEATEIQNIEIGCGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDR
MISENFPIKLTRF

Nucleotide sequence

Length: 1,463

>KH2012:KH.L38.16.v1.A.nonSL13-1
AAAAACCCGTATTACGAAGTGAACGATTCAGTTGATTGTTTTTGATCATTTTAAAGTTAG
TGTATGATAACTTGGATAAAACGAACATGGCAACTATAGAAATCAAGCTGAACAGACCAA
ACAAAGTTTATCACGAAGGGGAGACGGTTACTGGAGCTATTATTGTTGAATCCAAGACCT
CACTTGCTTACCAATCTGTGAGTCTTATTGCTGAGGGTGTCGCAGCTTTAACGTTGAGCG
CGAAAAGTGTTGGGAGGTTAGAGTCGATGTACAACAGCGTGAAACCAATATCATTGTTTG
GACATTCTATTGAACTTGCAAGACAGGGAAAAATACCAGCGGGCACGAAAAGCTTTCCTT
TTGAAATTCCATTAAAACCCCATGGAAGCATTAAATGGTTGCTGGAAACTTATAGGGGAG
TTTACATCTCTGTGCAGTACAACATCAAGTGCCTGTTGAAACGACCATTGCTAAACAAGG
ATCTCACAAAAGAAACTGAGATTTATATTGAGTATAAAAGTGGGGATAGAGCAAATAACA
AACCTATAAAGTTTAACATTAATCCAAACTCTATAAAGAATGCAAATTCACAAGCTGAGA
TCCCAAGATTCTCGGTCCGTGGTCGATTGGATTCTAGTGTTTGTTGCCTCACCAAACCAA
TGACAGGGGAACTTGTCGTCGAAGCTTCGGAAAACCCGATCCGTTCAATCGAGTTGCAAC
TAATGAGAGTGGAAACTGTGGGAAGTCCAGATGGTTTTGCTAAAGAAGCCACTGAGATCC
AGAACATAGAGATTGGTTGTGGTGATGTATGCAGAGGACTGAGCATCCCTATCTTCATGA
TCTTCCCCAGGATGTTTGCTTGCCCTACAGTTGACACACCTAACTTTAAGATTGAGTTCG
AACTTAACATTGTCATTGTGTTCGAAGACGACAGAATGATTAGCGAAAACTTCCCAATTA
AACTCACCAGATTTTAATGCTTGTGTTGTAACTTGTGATTATAGGCATCAAACCTGGGGT
GGCAGGGTGGACAGGCTAACCCTGGAATTTTCTGCACTGCATTAACCAGTAAACATTACA
ACCAATAAGTTAGATTTGTTTCACATGATTGTGTCTAAGTATCCCTGCCTCCCCTGTGTT
TATAAACTTTGGTGCCTGTGCTTGCAACTCCCTATTAATGTGCAATACACTTCTGCTGAT
TTACATTGATTTTTCAAACCTTATGGTGGCCAAGCAATGTCAGATTGGTCAATTTTGAGT
GGCATACTGGTAAATAAATTTTTCAGCAATTGAAATTAATTCAACCAAAAACACATCAAT
GCTGGACTTTAACTTGGTGTAATACAACATCCAGGTTTTGCTAAAATACAAGAATTTCAA
TTTTTGGGTCATTTTTTATAATTATTTTCGCATGTATCTACATTAAATATAATTTGCAAA
TAAACTAAGAAAACACAAATTCA

InterProScan

Gene3D	Arrestin_C (IPR014752) - T[4-162] 5.1E-25 - T[192-313] 3.3E-12
Pfam	Vps26-related (IPR028934) - T[10-299] 1.1E-42
PANTHER	Vps26-related (IPR028934) - T[18-312] 6.4E-116
SUPERFAMILY	Ig_E-set (IPR014756) - T[21-158] 4.06E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DSCR3_HUMAN	51.536 %	328	1.12E-112