Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL18-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,342 / 22,241]

Sequences

Amino acid sequence

Length: 300

>KH.L38.16.v1.A.nonSL18-1
DKTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAEGVAALTLSAKSVG
RLESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIKWLLETYRGVYISV
QYNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSIKNANSQAEIPRFS
VRGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDGFAKEATEIQNIEI
GCGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDRMISENFPIKLTRF

Nucleotide sequence

Length: 1,391

>KH2012:KH.L38.16.v1.A.nonSL18-1
TGGATAAAACGAACATGGCAACTATAGAAATCAAGCTGAACAGACCAAACAAAGTTTATC
ACGAAGGGGAGACGGTTACTGGAGCTATTATTGTTGAATCCAAGACCTCACTTGCTTACC
AATCTGTGAGTCTTATTGCTGAGGGTGTCGCAGCTTTAACGTTGAGCGCGAAAAGTGTTG
GGAGGTTAGAGTCGATGTACAACAGCGTGAAACCAATATCATTGTTTGGACATTCTATTG
AACTTGCAAGACAGGGAAAAATACCAGCGGGCACGAAAAGCTTTCCTTTTGAAATTCCAT
TAAAACCCCATGGAAGCATTAAATGGTTGCTGGAAACTTATAGGGGAGTTTACATCTCTG
TGCAGTACAACATCAAGTGCCTGTTGAAACGACCATTGCTAAACAAGGATCTCACAAAAG
AAACTGAGATTTATATTGAGTATAAAAGTGGGGATAGAGCAAATAACAAACCTATAAAGT
TTAACATTAATCCAAACTCTATAAAGAATGCAAATTCACAAGCTGAGATCCCAAGATTCT
CGGTCCGTGGTCGATTGGATTCTAGTGTTTGTTGCCTCACCAAACCAATGACAGGGGAAC
TTGTCGTCGAAGCTTCGGAAAACCCGATCCGTTCAATCGAGTTGCAACTAATGAGAGTGG
AAACTGTGGGAAGTCCAGATGGTTTTGCTAAAGAAGCCACTGAGATCCAGAACATAGAGA
TTGGTTGTGGTGATGTATGCAGAGGACTGAGCATCCCTATCTTCATGATCTTCCCCAGGA
TGTTTGCTTGCCCTACAGTTGACACACCTAACTTTAAGATTGAGTTCGAACTTAACATTG
TCATTGTGTTCGAAGACGACAGAATGATTAGCGAAAACTTCCCAATTAAACTCACCAGAT
TTTAATGCTTGTGTTGTAACTTGTGATTATAGGCATCAAACCTGGGGTGGCAGGGTGGAC
AGGCTAACCCTGGAATTTTCTGCACTGCATTAACCAGTAAACATTACAACCAATAAGTTA
GATTTGTTTCACATGATTGTGTCTAAGTATCCCTGCCTCCCCTGTGTTTATAAACTTTGG
TGCCTGTGCTTGCAACTCCCTATTAATGTGCAATACACTTCTGCTGATTTACATTGATTT
TTCAAACCTTATGGTGGCCAAGCAATGTCAGATTGGTCAATTTTGAGTGGCATACTGGTA
AATAAATTTTTCAGCAATTGAAATTAATTCAACCAAAAACACATCAATGCTGGACTTTAA
CTTGGTGTAATACAACATCCAGGTTTTGCTAAAATACAAGAATTTCAATTTTTGGGTCAT
TTTTTATAATTATTTTCGCATGTATCTACATTAAATATAATTTGCAAATAAACTAAGAAA
ACACAAATTCA

InterProScan

Gene3D	Arrestin_C (IPR014752) - T[1-149] 1.1E-24 - T[179-300] 3.0E-12
PANTHER	Vps26-related (IPR028934) - T[5-299] 5.4E-116
SUPERFAMILY	Ig_E-set (IPR014756) - T[8-145] 3.78E-9
Pfam	Vps26-related (IPR028934) - T[14-286] 2.9E-42

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DSCR3_HUMAN	51.536 %	327	8.77E-113