Aniseed - Transcript Card

Transcript 'KH2012:KH.L38.16.v1....'

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL19-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,317 / 22,241]

Sequences

Amino acid sequence

Length: 309

>KH.L38.16.v1.A.nonSL19-1
ILKLVYDNLDKTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAEGVAA
LTLSAKSVGRLESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIKWLLE
TYRGVYISVQYNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSIKNAN
SQAEIPRFSVRGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDGFAKE
ATEIQNIEIGCGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDRMISE
NFPIKLTRF

Nucleotide sequence

Length: 1,416

>KH2012:KH.L38.16.v1.A.nonSL19-1
ATTTTAAAGTTAGTGTATGATAACTTGGATAAAACGAACATGGCAACTATAGAAATCAAG
CTGAACAGACCAAACAAAGTTTATCACGAAGGGGAGACGGTTACTGGAGCTATTATTGTT
GAATCCAAGACCTCACTTGCTTACCAATCTGTGAGTCTTATTGCTGAGGGTGTCGCAGCT
TTAACGTTGAGCGCGAAAAGTGTTGGGAGGTTAGAGTCGATGTACAACAGCGTGAAACCA
ATATCATTGTTTGGACATTCTATTGAACTTGCAAGACAGGGAAAAATACCAGCGGGCACG
AAAAGCTTTCCTTTTGAAATTCCATTAAAACCCCATGGAAGCATTAAATGGTTGCTGGAA
ACTTATAGGGGAGTTTACATCTCTGTGCAGTACAACATCAAGTGCCTGTTGAAACGACCA
TTGCTAAACAAGGATCTCACAAAAGAAACTGAGATTTATATTGAGTATAAAAGTGGGGAT
AGAGCAAATAACAAACCTATAAAGTTTAACATTAATCCAAACTCTATAAAGAATGCAAAT
TCACAAGCTGAGATCCCAAGATTCTCGGTCCGTGGTCGATTGGATTCTAGTGTTTGTTGC
CTCACCAAACCAATGACAGGGGAACTTGTCGTCGAAGCTTCGGAAAACCCGATCCGTTCA
ATCGAGTTGCAACTAATGAGAGTGGAAACTGTGGGAAGTCCAGATGGTTTTGCTAAAGAA
GCCACTGAGATCCAGAACATAGAGATTGGTTGTGGTGATGTATGCAGAGGACTGAGCATC
CCTATCTTCATGATCTTCCCCAGGATGTTTGCTTGCCCTACAGTTGACACACCTAACTTT
AAGATTGAGTTCGAACTTAACATTGTCATTGTGTTCGAAGACGACAGAATGATTAGCGAA
AACTTCCCAATTAAACTCACCAGATTTTAATGCTTGTGTTGTAACTTGTGATTATAGGCA
TCAAACCTGGGGTGGCAGGGTGGACAGGCTAACCCTGGAATTTTCTGCACTGCATTAACC
AGTAAACATTACAACCAATAAGTTAGATTTGTTTCACATGATTGTGTCTAAGTATCCCTG
CCTCCCCTGTGTTTATAAACTTTGGTGCCTGTGCTTGCAACTCCCTATTAATGTGCAATA
CACTTCTGCTGATTTACATTGATTTTTCAAACCTTATGGTGGCCAAGCAATGTCAGATTG
GTCAATTTTGAGTGGCATACTGGTAAATAAATTTTTCAGCAATTGAAATTAATTCAACCA
AAAACACATCAATGCTGGACTTTAACTTGGTGTAATACAACATCCAGGTTTTGCTAAAAT
ACAAGAATTTCAATTTTTGGGTCATTTTTTATAATTATTTTCGCATGTATCTACATTAAA
TATAATTTGCAAATAAACTAAGAAAACACAAATTCA

InterProScan

Gene3D	Arrestin_C (IPR014752) - T[2-158] 5.6E-25 - T[188-309] 3.2E-12
Pfam	Vps26-related (IPR028934) - T[10-295] 1.3E-42
PANTHER	Vps26-related (IPR028934) - T[14-308] 6.1E-116
SUPERFAMILY	Ig_E-set (IPR014756) - T[17-154] 3.92E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DSCR3_HUMAN	51.536 %	327	1.09E-112