Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL2-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,325 / 22,241]

Sequences

Amino acid sequence

Length: 306

>KH.L38.16.v1.A.nonSL2-1
LVYDNLDKTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAEGVAALTL
SAKSVGRLESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIKWLLETYR
GVYISVQYNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSIKNANSQA
EIPRFSVRGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDGFAKEATE
IQNIEIGCGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDRMISENFP
IKLTRF

Nucleotide sequence

Length: 1,408

>KH2012:KH.L38.16.v1.A.nonSL2-1
GTTAGTGTATGATAACTTGGATAAAACGAACATGGCAACTATAGAAATCAAGCTGAACAG
ACCAAACAAAGTTTATCACGAAGGGGAGACGGTTACTGGAGCTATTATTGTTGAATCCAA
GACCTCACTTGCTTACCAATCTGTGAGTCTTATTGCTGAGGGTGTCGCAGCTTTAACGTT
GAGCGCGAAAAGTGTTGGGAGGTTAGAGTCGATGTACAACAGCGTGAAACCAATATCATT
GTTTGGACATTCTATTGAACTTGCAAGACAGGGAAAAATACCAGCGGGCACGAAAAGCTT
TCCTTTTGAAATTCCATTAAAACCCCATGGAAGCATTAAATGGTTGCTGGAAACTTATAG
GGGAGTTTACATCTCTGTGCAGTACAACATCAAGTGCCTGTTGAAACGACCATTGCTAAA
CAAGGATCTCACAAAAGAAACTGAGATTTATATTGAGTATAAAAGTGGGGATAGAGCAAA
TAACAAACCTATAAAGTTTAACATTAATCCAAACTCTATAAAGAATGCAAATTCACAAGC
TGAGATCCCAAGATTCTCGGTCCGTGGTCGATTGGATTCTAGTGTTTGTTGCCTCACCAA
ACCAATGACAGGGGAACTTGTCGTCGAAGCTTCGGAAAACCCGATCCGTTCAATCGAGTT
GCAACTAATGAGAGTGGAAACTGTGGGAAGTCCAGATGGTTTTGCTAAAGAAGCCACTGA
GATCCAGAACATAGAGATTGGTTGTGGTGATGTATGCAGAGGACTGAGCATCCCTATCTT
CATGATCTTCCCCAGGATGTTTGCTTGCCCTACAGTTGACACACCTAACTTTAAGATTGA
GTTCGAACTTAACATTGTCATTGTGTTCGAAGACGACAGAATGATTAGCGAAAACTTCCC
AATTAAACTCACCAGATTTTAATGCTTGTGTTGTAACTTGTGATTATAGGCATCAAACCT
GGGGTGGCAGGGTGGACAGGCTAACCCTGGAATTTTCTGCACTGCATTAACCAGTAAACA
TTACAACCAATAAGTTAGATTTGTTTCACATGATTGTGTCTAAGTATCCCTGCCTCCCCT
GTGTTTATAAACTTTGGTGCCTGTGCTTGCAACTCCCTATTAATGTGCAATACACTTCTG
CTGATTTACATTGATTTTTCAAACCTTATGGTGGCCAAGCAATGTCAGATTGGTCAATTT
TGAGTGGCATACTGGTAAATAAATTTTTCAGCAATTGAAATTAATTCAACCAAAAACACA
TCAATGCTGGACTTTAACTTGGTGTAATACAACATCCAGGTTTTGCTAAAATACAAGAAT
TTCAATTTTTGGGTCATTTTTTATAATTATTTTCGCATGTATCTACATTAAATATAATTT
GCAAATAAACTAAGAAAACACAAATTCA

InterProScan

Gene3D	Arrestin_C (IPR014752) - T[2-155] 7.5E-25 - T[185-306] 3.1E-12
PANTHER	Vps26-related (IPR028934) - T[11-305] 5.9E-116
SUPERFAMILY	Ig_E-set (IPR014756) - T[14-151] 3.85E-9
Pfam	Vps26-related (IPR028934) - T[19-292] 1.8E-42

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DSCR3_HUMAN	51.536 %	327	1.0E-112