Aniseed - Transcript Card

Transcript 'KH2012:KH.L38.16.v1....'

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL26-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,313 / 22,241]

Sequences

Amino acid sequence

Length: 310

>KH.L38.16.v1.A.nonSL26-1
IILKLVYDNLDKTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAEGVA
ALTLSAKSVGRLESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIKWLL
ETYRGVYISVQYNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSIKNA
NSQAEIPRFSVRGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDGFAK
EATEIQNIEIGCGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDRMIS
ENFPIKLTRF

Nucleotide sequence

Length: 1,420

>KH2012:KH.L38.16.v1.A.nonSL26-1
GATCATTTTAAAGTTAGTGTATGATAACTTGGATAAAACGAACATGGCAACTATAGAAAT
CAAGCTGAACAGACCAAACAAAGTTTATCACGAAGGGGAGACGGTTACTGGAGCTATTAT
TGTTGAATCCAAGACCTCACTTGCTTACCAATCTGTGAGTCTTATTGCTGAGGGTGTCGC
AGCTTTAACGTTGAGCGCGAAAAGTGTTGGGAGGTTAGAGTCGATGTACAACAGCGTGAA
ACCAATATCATTGTTTGGACATTCTATTGAACTTGCAAGACAGGGAAAAATACCAGCGGG
CACGAAAAGCTTTCCTTTTGAAATTCCATTAAAACCCCATGGAAGCATTAAATGGTTGCT
GGAAACTTATAGGGGAGTTTACATCTCTGTGCAGTACAACATCAAGTGCCTGTTGAAACG
ACCATTGCTAAACAAGGATCTCACAAAAGAAACTGAGATTTATATTGAGTATAAAAGTGG
GGATAGAGCAAATAACAAACCTATAAAGTTTAACATTAATCCAAACTCTATAAAGAATGC
AAATTCACAAGCTGAGATCCCAAGATTCTCGGTCCGTGGTCGATTGGATTCTAGTGTTTG
TTGCCTCACCAAACCAATGACAGGGGAACTTGTCGTCGAAGCTTCGGAAAACCCGATCCG
TTCAATCGAGTTGCAACTAATGAGAGTGGAAACTGTGGGAAGTCCAGATGGTTTTGCTAA
AGAAGCCACTGAGATCCAGAACATAGAGATTGGTTGTGGTGATGTATGCAGAGGACTGAG
CATCCCTATCTTCATGATCTTCCCCAGGATGTTTGCTTGCCCTACAGTTGACACACCTAA
CTTTAAGATTGAGTTCGAACTTAACATTGTCATTGTGTTCGAAGACGACAGAATGATTAG
CGAAAACTTCCCAATTAAACTCACCAGATTTTAATGCTTGTGTTGTAACTTGTGATTATA
GGCATCAAACCTGGGGTGGCAGGGTGGACAGGCTAACCCTGGAATTTTCTGCACTGCATT
AACCAGTAAACATTACAACCAATAAGTTAGATTTGTTTCACATGATTGTGTCTAAGTATC
CCTGCCTCCCCTGTGTTTATAAACTTTGGTGCCTGTGCTTGCAACTCCCTATTAATGTGC
AATACACTTCTGCTGATTTACATTGATTTTTCAAACCTTATGGTGGCCAAGCAATGTCAG
ATTGGTCAATTTTGAGTGGCATACTGGTAAATAAATTTTTCAGCAATTGAAATTAATTCA
ACCAAAAACACATCAATGCTGGACTTTAACTTGGTGTAATACAACATCCAGGTTTTGCTA
AAATACAAGAATTTCAATTTTTGGGTCATTTTTTATAATTATTTTCGCATGTATCTACAT
TAAATATAATTTGCAAATAAACTAAGAAAACACAAATTCA

InterProScan

Gene3D	Arrestin_C (IPR014752) - T[2-159] 5.4E-25 - T[189-310] 3.2E-12
Pfam	Vps26-related (IPR028934) - T[7-296] 1.1E-42
PANTHER	Vps26-related (IPR028934) - T[15-309] 6.2E-116
SUPERFAMILY	Ig_E-set (IPR014756) - T[18-155] 3.99E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DSCR3_HUMAN	51.536 %	327	1.19E-112