Aniseed - Transcript Card

Transcript 'KH2012:KH.S595.1.v1....' >
Transcript 'KH2012:KH.L38.16.v1....'

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL29-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,347 / 22,241]

Sequences

Amino acid sequence

Length: 299

>KH.L38.16.v1.A.nonSL29-1
KTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAEGVAALTLSAKSVGR
LESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIKWLLETYRGVYISVQ
YNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSIKNANSQAEIPRFSV
RGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDGFAKEATEIQNIEIG
CGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDRMISENFPIKLTRF

Nucleotide sequence

Length: 1,386

>KH2012:KH.L38.16.v1.A.nonSL29-1
AAAACGAACATGGCAACTATAGAAATCAAGCTGAACAGACCAAACAAAGTTTATCACGAA
GGGGAGACGGTTACTGGAGCTATTATTGTTGAATCCAAGACCTCACTTGCTTACCAATCT
GTGAGTCTTATTGCTGAGGGTGTCGCAGCTTTAACGTTGAGCGCGAAAAGTGTTGGGAGG
TTAGAGTCGATGTACAACAGCGTGAAACCAATATCATTGTTTGGACATTCTATTGAACTT
GCAAGACAGGGAAAAATACCAGCGGGCACGAAAAGCTTTCCTTTTGAAATTCCATTAAAA
CCCCATGGAAGCATTAAATGGTTGCTGGAAACTTATAGGGGAGTTTACATCTCTGTGCAG
TACAACATCAAGTGCCTGTTGAAACGACCATTGCTAAACAAGGATCTCACAAAAGAAACT
GAGATTTATATTGAGTATAAAAGTGGGGATAGAGCAAATAACAAACCTATAAAGTTTAAC
ATTAATCCAAACTCTATAAAGAATGCAAATTCACAAGCTGAGATCCCAAGATTCTCGGTC
CGTGGTCGATTGGATTCTAGTGTTTGTTGCCTCACCAAACCAATGACAGGGGAACTTGTC
GTCGAAGCTTCGGAAAACCCGATCCGTTCAATCGAGTTGCAACTAATGAGAGTGGAAACT
GTGGGAAGTCCAGATGGTTTTGCTAAAGAAGCCACTGAGATCCAGAACATAGAGATTGGT
TGTGGTGATGTATGCAGAGGACTGAGCATCCCTATCTTCATGATCTTCCCCAGGATGTTT
GCTTGCCCTACAGTTGACACACCTAACTTTAAGATTGAGTTCGAACTTAACATTGTCATT
GTGTTCGAAGACGACAGAATGATTAGCGAAAACTTCCCAATTAAACTCACCAGATTTTAA
TGCTTGTGTTGTAACTTGTGATTATAGGCATCAAACCTGGGGTGGCAGGGTGGACAGGCT
AACCCTGGAATTTTCTGCACTGCATTAACCAGTAAACATTACAACCAATAAGTTAGATTT
GTTTCACATGATTGTGTCTAAGTATCCCTGCCTCCCCTGTGTTTATAAACTTTGGTGCCT
GTGCTTGCAACTCCCTATTAATGTGCAATACACTTCTGCTGATTTACATTGATTTTTCAA
ACCTTATGGTGGCCAAGCAATGTCAGATTGGTCAATTTTGAGTGGCATACTGGTAAATAA
ATTTTTCAGCAATTGAAATTAATTCAACCAAAAACACATCAATGCTGGACTTTAACTTGG
TGTAATACAACATCCAGGTTTTGCTAAAATACAAGAATTTCAATTTTTGGGTCATTTTTT
ATAATTATTTTCGCATGTATCTACATTAAATATAATTTGCAAATAAACTAAGAAAACACA
AATTCA

InterProScan

Gene3D	Arrestin_C (IPR014752) - T[1-148] 1.3E-24 - T[178-299] 3.0E-12
PANTHER	Vps26-related (IPR028934) - T[4-298] 5.4E-116
SUPERFAMILY	Ig_E-set (IPR014756) - T[7-144] 3.78E-9
Pfam	Vps26-related (IPR028934) - T[14-285] 3.1E-42

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DSCR3_HUMAN	51.536 %	327	6.87E-113