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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L38.16.v1....'

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL30-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,336 / 22,241]

Sequences

Amino acid sequence

Length: 302

>KH.L38.16.v1.A.nonSL30-1
NLDKTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAEGVAALTLSAKS
VGRLESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIKWLLETYRGVYI
SVQYNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSIKNANSQAEIPR
FSVRGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDGFAKEATEIQNI
EIGCGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDRMISENFPIKLT
RF

Nucleotide sequence

Length: 1,397

>KH2012:KH.L38.16.v1.A.nonSL30-1
ATAACTTGGATAAAACGAACATGGCAACTATAGAAATCAAGCTGAACAGACCAAACAAAG
TTTATCACGAAGGGGAGACGGTTACTGGAGCTATTATTGTTGAATCCAAGACCTCACTTG
CTTACCAATCTGTGAGTCTTATTGCTGAGGGTGTCGCAGCTTTAACGTTGAGCGCGAAAA
GTGTTGGGAGGTTAGAGTCGATGTACAACAGCGTGAAACCAATATCATTGTTTGGACATT
CTATTGAACTTGCAAGACAGGGAAAAATACCAGCGGGCACGAAAAGCTTTCCTTTTGAAA
TTCCATTAAAACCCCATGGAAGCATTAAATGGTTGCTGGAAACTTATAGGGGAGTTTACA
TCTCTGTGCAGTACAACATCAAGTGCCTGTTGAAACGACCATTGCTAAACAAGGATCTCA
CAAAAGAAACTGAGATTTATATTGAGTATAAAAGTGGGGATAGAGCAAATAACAAACCTA
TAAAGTTTAACATTAATCCAAACTCTATAAAGAATGCAAATTCACAAGCTGAGATCCCAA
GATTCTCGGTCCGTGGTCGATTGGATTCTAGTGTTTGTTGCCTCACCAAACCAATGACAG
GGGAACTTGTCGTCGAAGCTTCGGAAAACCCGATCCGTTCAATCGAGTTGCAACTAATGA
GAGTGGAAACTGTGGGAAGTCCAGATGGTTTTGCTAAAGAAGCCACTGAGATCCAGAACA
TAGAGATTGGTTGTGGTGATGTATGCAGAGGACTGAGCATCCCTATCTTCATGATCTTCC
CCAGGATGTTTGCTTGCCCTACAGTTGACACACCTAACTTTAAGATTGAGTTCGAACTTA
ACATTGTCATTGTGTTCGAAGACGACAGAATGATTAGCGAAAACTTCCCAATTAAACTCA
CCAGATTTTAATGCTTGTGTTGTAACTTGTGATTATAGGCATCAAACCTGGGGTGGCAGG
GTGGACAGGCTAACCCTGGAATTTTCTGCACTGCATTAACCAGTAAACATTACAACCAAT
AAGTTAGATTTGTTTCACATGATTGTGTCTAAGTATCCCTGCCTCCCCTGTGTTTATAAA
CTTTGGTGCCTGTGCTTGCAACTCCCTATTAATGTGCAATACACTTCTGCTGATTTACAT
TGATTTTTCAAACCTTATGGTGGCCAAGCAATGTCAGATTGGTCAATTTTGAGTGGCATA
CTGGTAAATAAATTTTTCAGCAATTGAAATTAATTCAACCAAAAACACATCAATGCTGGA
CTTTAACTTGGTGTAATACAACATCCAGGTTTTGCTAAAATACAAGAATTTCAATTTTTG
GGTCATTTTTTATAATTATTTTCGCATGTATCTACATTAAATATAATTTGCAAATAAACT
AAGAAAACACAAATTCA

InterProScan

Gene3D
Arrestin_C (IPR014752) - T[2-151] 1.0E-24 - T[181-302] 3.0E-12
PANTHER
Vps26-related (IPR028934) - T[7-301] 5.6E-116
SUPERFAMILY
Ig_E-set (IPR014756) - T[10-147] 3.85E-9
Pfam
Vps26-related (IPR028934) - T[16-288] 2.7E-42

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DSCR3_HUMAN 51.536 % 327 9.24E-113