Aniseed - Transcript Card

Transcript 'KH2012:KH.L38.16.v1....'

Transcript Model

Transcript Id

KH2012:KH.L38.16.v1.A.nonSL5-1

Possible name(s)

VPS26A; VPS26B; VPS26C

Gene model

KH2012:KH.L38.16

Location

KhL38 [19,331 / 22,241]

Sequences

Amino acid sequence

Length: 304

>KH.L38.16.v1.A.nonSL5-1
YDNLDKTNMATIEIKLNRPNKVYHEGETVTGAIIVESKTSLAYQSVSLIAEGVAALTLSA
KSVGRLESMYNSVKPISLFGHSIELARQGKIPAGTKSFPFEIPLKPHGSIKWLLETYRGV
YISVQYNIKCLLKRPLLNKDLTKETEIYIEYKSGDRANNKPIKFNINPNSIKNANSQAEI
PRFSVRGRLDSSVCCLTKPMTGELVVEASENPIRSIELQLMRVETVGSPDGFAKEATEIQ
NIEIGCGDVCRGLSIPIFMIFPRMFACPTVDTPNFKIEFELNIVIVFEDDRMISENFPIK
LTRF

Nucleotide sequence

Length: 1,402

>KH2012:KH.L38.16.v1.A.nonSL5-1
GTATGATAACTTGGATAAAACGAACATGGCAACTATAGAAATCAAGCTGAACAGACCAAA
CAAAGTTTATCACGAAGGGGAGACGGTTACTGGAGCTATTATTGTTGAATCCAAGACCTC
ACTTGCTTACCAATCTGTGAGTCTTATTGCTGAGGGTGTCGCAGCTTTAACGTTGAGCGC
GAAAAGTGTTGGGAGGTTAGAGTCGATGTACAACAGCGTGAAACCAATATCATTGTTTGG
ACATTCTATTGAACTTGCAAGACAGGGAAAAATACCAGCGGGCACGAAAAGCTTTCCTTT
TGAAATTCCATTAAAACCCCATGGAAGCATTAAATGGTTGCTGGAAACTTATAGGGGAGT
TTACATCTCTGTGCAGTACAACATCAAGTGCCTGTTGAAACGACCATTGCTAAACAAGGA
TCTCACAAAAGAAACTGAGATTTATATTGAGTATAAAAGTGGGGATAGAGCAAATAACAA
ACCTATAAAGTTTAACATTAATCCAAACTCTATAAAGAATGCAAATTCACAAGCTGAGAT
CCCAAGATTCTCGGTCCGTGGTCGATTGGATTCTAGTGTTTGTTGCCTCACCAAACCAAT
GACAGGGGAACTTGTCGTCGAAGCTTCGGAAAACCCGATCCGTTCAATCGAGTTGCAACT
AATGAGAGTGGAAACTGTGGGAAGTCCAGATGGTTTTGCTAAAGAAGCCACTGAGATCCA
GAACATAGAGATTGGTTGTGGTGATGTATGCAGAGGACTGAGCATCCCTATCTTCATGAT
CTTCCCCAGGATGTTTGCTTGCCCTACAGTTGACACACCTAACTTTAAGATTGAGTTCGA
ACTTAACATTGTCATTGTGTTCGAAGACGACAGAATGATTAGCGAAAACTTCCCAATTAA
ACTCACCAGATTTTAATGCTTGTGTTGTAACTTGTGATTATAGGCATCAAACCTGGGGTG
GCAGGGTGGACAGGCTAACCCTGGAATTTTCTGCACTGCATTAACCAGTAAACATTACAA
CCAATAAGTTAGATTTGTTTCACATGATTGTGTCTAAGTATCCCTGCCTCCCCTGTGTTT
ATAAACTTTGGTGCCTGTGCTTGCAACTCCCTATTAATGTGCAATACACTTCTGCTGATT
TACATTGATTTTTCAAACCTTATGGTGGCCAAGCAATGTCAGATTGGTCAATTTTGAGTG
GCATACTGGTAAATAAATTTTTCAGCAATTGAAATTAATTCAACCAAAAACACATCAATG
CTGGACTTTAACTTGGTGTAATACAACATCCAGGTTTTGCTAAAATACAAGAATTTCAAT
TTTTGGGTCATTTTTTATAATTATTTTCGCATGTATCTACATTAAATATAATTTGCAAAT
AAACTAAGAAAACACAAATTCA

InterProScan

Gene3D	Arrestin_C (IPR014752) - T[2-153] 8.3E-25 - T[183-304] 3.1E-12
PANTHER	Vps26-related (IPR028934) - T[9-303] 5.7E-116
SUPERFAMILY	Ig_E-set (IPR014756) - T[12-149] 3.78E-9
Pfam	Vps26-related (IPR028934) - T[18-290] 2.3E-42

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DSCR3_HUMAN	51.536 %	327	1.27E-112