- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Clone 'cima820328' >
- Transcript 'KH2012:KH.L41.5.v1.C...'
Transcript Model
Transcript Id
KH2012:KH.L41.5.v1.C.SL1-1
Possible name(s)
TGFBRAP1; VPS39; VPS41
Gene model
Location
KhL41 [201,424 / 204,047]
Amino acid sequence
Length: 868
>KH.L41.5.v1.C.SL1-1
STMALKVFDLKLVLGREHIIGDKRTCIESIETNGRNVYLGTNDGNIHHYLLNIEESRESK
TVEAIRQTVKQIGTKKSISQISAAPALNHLVVNCEGNLLLLSMLDLSVTNVAPGKLKNIT
SFCVNRRPMHQNPFTVEICVAFNKKRVLQIYQVSKDSSTLMQELSLPEQPKSFSMDGKAI
CVATSTTYIIINCETGTRQELMSIGEDGMLSMVSHVGVSEFLISASNALGVFVSIDGTSN
RPPLQWSDGVFNVAVAEPYLTALNDEFVTVHSLLDNQQKQSIPLRGGNLIRSCVGGMILL
CTAKDVMVLIPVSLETQLQGLFNSGSVEAALSLVQSSKKRLSKSKYETLWSRACCMAGFI
QLAQFDFEAAKQYFLDGSMDPRELISLFPGLVPSSSSFIPSVPALHNLSNIQQVCSDDKN
KLEECKTFLAAYLEELCNTNTKPDVFYATVLVLAQLGKKETVQQIIEMKNAENQSFLETL
DQNIVEEMVFKLKEVKCFHQLALVHLHSGDTDDAMKIWKSIVTCDISDESFPGVGFVVSE
LSHRAIDAATLWKNAEWILQCDQHSGAQLFIDIFNNNNESLNVDNVVSFLHEFPIALCEY
LYHLVIVCKVQKEKLHTHIAVMFLEQVLSLHKSQEDKNSLEEARKKLQEILRFSNLYRVH
LILNKVQEFGLFAEQVILHSKLGEHDKALEILVHNLSDPLAAKNYCIEQGEGNDKFRQQL
FHSLLSVYFSDISATRGSSGSVTAAIDILNEHPEDFNWESVLHLIPTQWSVSLIRNFLEH
VLRDRIHGCRSRKIERSLIKSEVLFLHREQHLLHSRPVVIHENRVCNVCNRTLSDSPLAR
YPNGVVIHAHCCKNKYVCPVTGKLFKV+
Nucleotide sequence
Length: 2,623
>KH2012:KH.L41.5.v1.C.SL1-1
GTACAATGATAACAGTTTGATCTACCATGGCTTTGAAAGTTTTTGATTTGAAGCTTGTCC
TTGGACGTGAACATATCATTGGGGATAAACGGACATGTATTGAGAGCATTGAGACTAACG
GTAGAAACGTCTACCTTGGGACTAACGATGGGAACATTCACCATTATTTGCTCAACATTG
AAGAAAGCAGGGAATCTAAGACAGTTGAAGCTATCAGGCAAACTGTGAAGCAGATAGGAA
CCAAGAAGTCAATATCTCAAATATCTGCGGCCCCAGCTTTAAATCACTTGGTGGTAAATT
GTGAAGGGAATTTACTTCTGTTGAGTATGTTGGATCTATCTGTTACTAATGTAGCACCTG
GAAAGCTGAAGAATATAACCTCATTCTGTGTGAATAGAAGGCCTATGCATCAAAATCCTT
TTACTGTTGAAATTTGTGTTGCTTTCAATAAAAAGAGGGTTTTACAAATATACCAGGTCA
GCAAAGACAGCAGTACCCTCATGCAAGAGTTGTCGCTACCTGAACAACCAAAGTCTTTTT
CCATGGATGGTAAAGCTATATGTGTGGCAACATCAACTACTTACATTATCATTAATTGTG
AGACGGGCACAAGACAAGAACTGATGTCAATCGGGGAAGATGGGATGCTTAGTATGGTGT
CCCATGTTGGGGTATCAGAGTTCCTTATATCAGCATCTAATGCACTGGGTGTGTTTGTGA
GTATAGATGGTACATCTAATAGGCCACCCTTGCAATGGTCTGATGGTGTGTTTAATGTTG
CTGTGGCTGAACCTTATCTTACTGCATTAAATGATGAGTTCGTTACAGTCCATAGTTTGT
TGGATAATCAACAGAAACAATCCATTCCTTTAAGAGGTGGAAACCTTATAAGGAGTTGTG
TGGGTGGTATGATACTGCTATGCACTGCAAAAGATGTAATGGTTCTTATCCCTGTGTCAT
TGGAAACTCAACTGCAAGGTTTGTTCAACAGTGGTAGTGTAGAAGCCGCGTTGTCTCTTG
TGCAAAGCTCAAAAAAACGACTTTCAAAATCAAAGTATGAAACTTTATGGAGCCGTGCTT
GTTGTATGGCAGGCTTCATACAGTTGGCTCAGTTTGACTTTGAAGCTGCAAAGCAATATT
TCCTGGATGGCTCCATGGATCCACGGGAGTTGATATCATTGTTTCCAGGACTTGTCCCTT
CTTCCTCATCTTTTATCCCATCCGTTCCCGCTCTTCATAATTTATCAAACATCCAACAAG
TTTGTAGCGATGATAAAAATAAATTAGAGGAATGTAAAACCTTCCTTGCTGCTTATCTGG
AAGAACTTTGCAACACTAACACGAAACCTGATGTGTTTTACGCCACGGTGCTTGTTCTCG
CACAGTTGGGGAAAAAAGAAACTGTCCAACAGATAATTGAGATGAAAAATGCAGAAAATC
AAAGTTTTTTGGAGACTTTGGATCAAAATATTGTTGAAGAGATGGTTTTCAAGTTGAAGG
AGGTAAAATGTTTCCATCAACTCGCGCTAGTGCATTTACATAGTGGTGATACGGACGATG
CTATGAAAATATGGAAGTCTATTGTGACTTGCGATATTTCCGATGAGTCGTTTCCTGGAG
TTGGATTTGTCGTTTCAGAGTTATCGCACCGAGCGATAGATGCTGCCACCCTGTGGAAAA
ACGCAGAATGGATTTTACAATGCGACCAACACTCGGGGGCGCAGTTGTTCATAGATATCT
TCAATAATAACAATGAAAGCTTAAACGTCGACAATGTTGTGAGTTTTCTCCATGAGTTTC
CAATCGCTCTCTGTGAATATCTTTACCACCTGGTGATCGTATGTAAAGTACAGAAGGAGA
AGCTTCACACACATATTGCTGTAATGTTCCTTGAACAAGTGCTGTCTCTACATAAGTCAC
AAGAGGATAAAAACTCCCTTGAAGAAGCGAGGAAAAAGTTGCAAGAAATATTAAGGTTTT
CAAATCTTTACCGAGTCCATCTGATCCTAAACAAAGTACAGGAGTTTGGGTTATTCGCTG
AACAAGTAATCCTGCATAGTAAGCTTGGTGAGCATGACAAAGCATTGGAAATACTCGTGC
ATAACTTAAGTGATCCACTTGCTGCGAAGAACTACTGCATTGAACAAGGAGAGGGCAATG
ATAAATTTCGGCAACAACTTTTCCATAGTTTGTTATCCGTTTATTTCTCCGATATATCAG
CCACACGAGGCAGTAGTGGGTCCGTCACGGCAGCGATTGATATTTTAAACGAACATCCTG
AAGATTTTAACTGGGAGAGCGTTTTACACTTGATCCCCACCCAGTGGTCAGTTTCTTTGA
TCCGCAACTTCTTGGAACATGTCCTCCGTGATCGCATCCATGGATGCAGGTCAAGGAAGA
TCGAACGCAGCCTCATAAAGTCTGAGGTCCTCTTCCTCCACAGAGAGCAACATCTTCTCC
ATTCCCGACCAGTTGTCATTCACGAGAACAGGGTTTGCAATGTTTGCAACCGTACATTAT
CTGACTCTCCGCTTGCCCGCTACCCTAACGGGGTTGTCATTCATGCTCATTGTTGTAAGA
ACAAATACGTTTGTCCCGTCACAGGAAAGTTATTCAAAGTATC
| ProSiteProfiles |
CNH_dom (IPR001180) - T[21-297] 20.76 |
| PANTHER |
Vam6/VPS39/TRAP1 (IPR032914) - T[24-855] 5.8E-168 |
| Pfam |
CNH_dom (IPR001180) - T[31-285] 4.5E-16 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[571-733] 21.615 |
| Pfam |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[575-709] 1.1E-7 |
| Pfam |
VPS39/TGF_beta_rcpt-assoc_2 (IPR019453) - T[746-853] 3.1E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS39_HUMAN | 24.146 % | 174 | 5.84E-45 |
| TGFA1_HUMAN | 35.853 % | 572 | 0 |