Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L4.55.v1.A.nonSL19-1

Possible name(s)

CCT3; CCT4; CCT7

Gene model

KH2012:KH.L4.55

Location

KhL4 [77,116 / 78,773]

Sequences

Amino acid sequence

Length: 399

>KH.L4.55.v1.A.nonSL19-1
QNRVMSAPVLVLNQNSKRESGRKVQLGNVAAAKTIADVIRTCLGPRSMLKMLMDPMGGIV
MTNDGNAILREITVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMMTAAEQFLEQNMH
PTVIIGAYRKALDDMQEILGEMSVEVDVNKKSEMRKIVKSAIGTKFINKRLRKSDNNRIA
RACGATVCSRTEEIREEDIGTEAGLFEVRKFGEEYFTFITKCKNPKACTILLRGASKDVL
MEVERNLQDAMQVTRNVMINPQLLPGGGAVEMAVAQKMKALSKSMMGVEQWPYRAVADAL
EIIPRTLIQNCGASTIRTITALRAKHADAGNETWGVNGESGQIADMNVLDVWEPLSVKLQ
TYKTAMETAMLLLRIDDIVSGTKKAEGGEGTGTAAPTGA

Nucleotide sequence

Length: 1,213

>KH2012:KH.L4.55.v1.A.nonSL19-1
ATTATCTTCGTAACAGAACAGAGTCATGTCGGCGCCGGTGCTCGTTCTTAACCAGAATTC
TAAGCGTGAATCGGGACGCAAGGTCCAACTAGGTAATGTCGCAGCCGCTAAAACGATAGC
TGACGTTATAAGAACATGTTTGGGTCCAAGGTCTATGCTGAAAATGCTAATGGACCCAAT
GGGTGGGATCGTGATGACAAATGATGGGAACGCCATCCTCCGTGAGATCACAGTCCAACA
TCCAGCAGCCAAGTCCATGATAGAGATCAGCAGGACACAAGATGAGGAGGTGGGAGACGG
GACAACCTCAGTGATCATCTTAGCAGGGGAGATGATGACAGCAGCTGAGCAGTTCCTGGA
GCAGAATATGCATCCAACAGTGATCATTGGTGCTTACCGGAAAGCTCTGGATGACATGCA
AGAGATCTTAGGAGAAATGAGCGTGGAAGTGGATGTGAACAAGAAGTCCGAGATGAGGAA
GATAGTGAAGAGCGCGATCGGGACGAAGTTCATCAATAAGAGACTTCGGAAGTCTGATAA
TAATCGTATCGCTCGTGCCTGTGGCGCCACCGTGTGCTCAAGAACAGAGGAGATAAGAGA
AGAGGACATAGGAACTGAGGCCGGGCTGTTTGAGGTCCGGAAGTTTGGTGAAGAGTATTT
CACCTTCATCACTAAATGCAAGAACCCGAAGGCGTGCACCATCTTGCTTCGTGGAGCGAG
TAAAGATGTGTTAATGGAGGTTGAGAGGAATCTTCAGGATGCGATGCAGGTGACGAGGAA
CGTGATGATCAACCCACAACTTCTACCAGGTGGTGGCGCTGTGGAGATGGCAGTTGCTCA
AAAGATGAAGGCGCTGTCGAAATCCATGATGGGGGTGGAGCAGTGGCCGTACCGAGCTGT
CGCTGATGCATTGGAGATTATACCGCGTACCTTGATACAGAATTGTGGTGCAAGCACAAT
ACGTACGATCACCGCACTCCGTGCTAAACATGCAGATGCTGGGAATGAAACATGGGGAGT
GAACGGAGAATCTGGGCAGATCGCGGATATGAACGTGCTCGATGTATGGGAACCTTTGTC
TGTTAAACTTCAAACGTACAAGACAGCTATGGAGACCGCCATGCTATTGCTTAGAATTGA
TGATATTGTTTCTGGAACTAAAAAGGCAGAAGGAGGGGAGGGAACTGGAACAGCCGCGCC
CACTGGAGCATGA

InterProScan

PANTHER	Cpn60/TCP-1 (IPR002423) - T[10-169] 1.5E-198 - T[169-389] 1.5E-198
SUPERFAMILY	GROEL-like_equatorial_sf (IPR027413) - T[16-146] 1.15E-84 - T[261-381] 1.15E-84
Gene3D	GROEL-like_equatorial_sf (IPR027413) - T[28-146] 1.6E-55 - T[262-379] 7.4E-77
Pfam	Cpn60/TCP-1 (IPR002423) - T[35-169] 3.9E-49 - T[168-380] 4.3E-67
PRINTS	Chaperone_TCP-1 (IPR017998) - T[37-53] 1.4E-15 - T[59-77] 1.4E-15 - T[89-108] 1.4E-15
ProSitePatterns	Chaperonin_TCP-1_CS (IPR002194) - T[40-52] . - T[61-77] . - T[89-97] .
Gene3D	TCP-1-like_intermed_sf (IPR027410) - T[147-168] 1.6E-55 - T[227-261] 7.4E-77
SUPERFAMILY	GroEL-like_apical_dom_sf (IPR027409) - T[167-234] 6.38E-16
Gene3D	GroEL-like_apical_dom_sf (IPR027409) - T[169-226] 7.4E-77

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TCPH_HUMAN	32.766 %	132	6.04E-34
TCPG_HUMAN	70.614 %	348	3.6E-116
TCPD_HUMAN	38.816 %	131	9.07E-34