Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L4.55.v1.A.nonSL4-1

Possible name(s)

CCT3; CCT4; CCT7

Gene model

KH2012:KH.L4.55

Location

KhL4 [77,116 / 78,716]

Sequences

Amino acid sequence

Length: 384

>KH.L4.55.v1.A.nonSL4-1
SKRESGRKVQLGNVAAAKTIADVIRTCLGPRSMLKMLMDPMGGIVMTNDGNAILREITVQ
HPAAKSMIEISRTQDEEVGDGTTSVIILAGEMMTAAEQFLEQNMHPTVIIGAYRKALDDM
QEILGEMSVEVDVNKKSEMRKIVKSAIGTKFINKRLRKSDNNRIARACGATVCSRTEEIR
EEDIGTEAGLFEVRKFGEEYFTFITKCKNPKACTILLRGASKDVLMEVERNLQDAMQVTR
NVMINPQLLPGGGAVEMAVAQKMKALSKSMMGVEQWPYRAVADALEIIPRTLIQNCGAST
IRTITALRAKHADAGNETWGVNGESGQIADMNVLDVWEPLSVKLQTYKTAMETAMLLLRI
DDIVSGTKKAEGGEGTGTAAPTGA

Nucleotide sequence

Length: 1,156

>KH2012:KH.L4.55.v1.A.nonSL4-1
TTCTAAGCGTGAATCGGGACGCAAGGTCCAACTAGGTAATGTCGCAGCCGCTAAAACGAT
AGCTGACGTTATAAGAACATGTTTGGGTCCAAGGTCTATGCTGAAAATGCTAATGGACCC
AATGGGTGGGATCGTGATGACAAATGATGGGAACGCCATCCTCCGTGAGATCACAGTCCA
ACATCCAGCAGCCAAGTCCATGATAGAGATCAGCAGGACACAAGATGAGGAGGTGGGAGA
CGGGACAACCTCAGTGATCATCTTAGCAGGGGAGATGATGACAGCAGCTGAGCAGTTCCT
GGAGCAGAATATGCATCCAACAGTGATCATTGGTGCTTACCGGAAAGCTCTGGATGACAT
GCAAGAGATCTTAGGAGAAATGAGCGTGGAAGTGGATGTGAACAAGAAGTCCGAGATGAG
GAAGATAGTGAAGAGCGCGATCGGGACGAAGTTCATCAATAAGAGACTTCGGAAGTCTGA
TAATAATCGTATCGCTCGTGCCTGTGGCGCCACCGTGTGCTCAAGAACAGAGGAGATAAG
AGAAGAGGACATAGGAACTGAGGCCGGGCTGTTTGAGGTCCGGAAGTTTGGTGAAGAGTA
TTTCACCTTCATCACTAAATGCAAGAACCCGAAGGCGTGCACCATCTTGCTTCGTGGAGC
GAGTAAAGATGTGTTAATGGAGGTTGAGAGGAATCTTCAGGATGCGATGCAGGTGACGAG
GAACGTGATGATCAACCCACAACTTCTACCAGGTGGTGGCGCTGTGGAGATGGCAGTTGC
TCAAAAGATGAAGGCGCTGTCGAAATCCATGATGGGGGTGGAGCAGTGGCCGTACCGAGC
TGTCGCTGATGCATTGGAGATTATACCGCGTACCTTGATACAGAATTGTGGTGCAAGCAC
AATACGTACGATCACCGCACTCCGTGCTAAACATGCAGATGCTGGGAATGAAACATGGGG
AGTGAACGGAGAATCTGGGCAGATCGCGGATATGAACGTGCTCGATGTATGGGAACCTTT
GTCTGTTAAACTTCAAACGTACAAGACAGCTATGGAGACCGCCATGCTATTGCTTAGAAT
TGATGATATTGTTTCTGGAACTAAAAAGGCAGAAGGAGGGGAGGGAACTGGAACAGCCGC
GCCCACTGGAGCATGA

InterProScan

SUPERFAMILY	GROEL-like_equatorial_sf (IPR027413) - T[2-131] 1.44E-84 - T[246-366] 1.44E-84
PANTHER	Cpn60/TCP-1 (IPR002423) - T[2-154] 5.1E-197 - T[154-374] 5.1E-197
Gene3D	GROEL-like_equatorial_sf (IPR027413) - T[13-131] 1.4E-55 - T[247-364] 6.7E-77
Pfam	Cpn60/TCP-1 (IPR002423) - T[20-154] 3.6E-49 - T[153-365] 3.9E-67
PRINTS	Chaperone_TCP-1 (IPR017998) - T[22-38] 1.3E-15 - T[44-62] 1.3E-15 - T[74-93] 1.3E-15
ProSitePatterns	Chaperonin_TCP-1_CS (IPR002194) - T[25-37] . - T[46-62] . - T[74-82] .
Gene3D	TCP-1-like_intermed_sf (IPR027410) - T[132-153] 1.4E-55 - T[212-246] 6.7E-77
SUPERFAMILY	GroEL-like_apical_dom_sf (IPR027409) - T[152-219] 5.96E-16
Gene3D	GroEL-like_apical_dom_sf (IPR027409) - T[154-211] 6.7E-77

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TCPH_HUMAN	32.766 %	132	4.61E-34
TCPG_HUMAN	70.614 %	348	3.69E-116
TCPD_HUMAN	38.816 %	131	7.43E-34