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TRANSCRIPT CARD

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  1. Transcript 'Moocci.CG.ELv1_2.S63...'
  2. Molecular Tool 'Tbx6b/c/d-MO (Imai's 25mer MO)'
  3. Transcript 'KH2012:KH.L5.2.v1.A....'

Transcript Model

Transcript Id

KH2012:KH.L5.2.v1.A.nonSL12-1

Possible name(s)

PSMC1; PSMC4

Gene model

KH2012:KH.L5.2

Location

KhL5 [83,607 / 89,013]

Sequences

Amino acid sequence

Length: 451

>KH.L5.2.v1.A.nonSL12-1
KLFRWTYSMGQNQSGGGRNGAGDNKKGDKGKEKKKYERPLPTRVGKRRKKAKGPDAANKL
PSVTPHTRCRLRLLKQERIKDYLLMEEEYIRNQERLKPQEEKQEEERTKVDDLRGSPMSV
GTLEEIIDENHAIVSTSVGSEHYVSILSFVDKDLLEPGCTVLMNHKVHAVVGFLGDDVDP
LVTVMKLEKAPKESYADIGGLDTQITEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPG
TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA
IGTKRYESNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRAGRIDR
KIEFPMPDEKTKRRIFNIHTARMTLSDDVNVDEHVQAKDDLSGADIKAICTEAGLLALRE
RRMKVTSEDFKKSKENVLYRKNEGAPQGLYL

Nucleotide sequence

Length: 1,687

>KH2012:KH.L5.2.v1.A.nonSL12-1
ATTTACGAAATTAATTTGAAAGCTTTTCCGGTGGACCTATTCAATGGGCCAAAATCAAAG
TGGGGGAGGCCGGAATGGTGCCGGGGATAACAAGAAAGGGGACAAGGGGAAAGAGAAAAA
GAAATATGAACGACCTCTGCCGACAAGAGTTGGTAAACGTAGAAAGAAGGCAAAAGGACC
AGATGCCGCTAACAAGTTGCCCAGTGTAACTCCTCATACCCGGTGTCGGCTTCGTCTTTT
AAAACAAGAACGCATCAAGGATTATCTTTTAATGGAGGAGGAATACATCAGGAACCAGGA
GCGCCTCAAGCCACAAGAAGAAAAGCAAGAGGAAGAACGCACAAAAGTCGATGATTTGAG
AGGTTCTCCCATGTCGGTTGGAACGCTGGAGGAAATTATCGATGAAAATCACGCCATTGT
TTCAACTTCTGTGGGATCCGAACATTACGTTAGCATCTTGTCGTTTGTTGACAAAGATTT
GCTGGAACCAGGATGTACAGTGCTCATGAATCATAAGGTCCACGCAGTTGTTGGTTTCCT
CGGAGATGATGTTGATCCTCTCGTGACCGTGATGAAACTTGAAAAAGCTCCGAAAGAATC
ATACGCTGATATCGGGGGGCTGGATACACAGATTACTGAAATAAAGGAATCTGTGGAGCT
GCCATTAACCCACCCCGAGTATTACGAAGAAATGGGGATTAAACCTCCTAAAGGTGTGAT
CTTGTATGGACCCCCTGGAACCGGTAAAACATTGCTAGCGAAAGCTGTAGCCAACCAAAC
ATCGGCGACCTTTCTACGTGTGGTTGGGTCAGAGTTGATACAGAAATACCTCGGTGACGG
ACCTAAACTTGTGAGGGAATTATTCCGTGTGGCAGAGGAGCATGCGCCATCCATTGTGTT
TATTGATGAGATTGATGCCATTGGTACTAAGAGATACGAATCTAACTCTGGTGGTGAACG
TGAGATACAGCGTACGATGTTAGAGTTATTGAACCAACTTGATGGTTTTGACTCGAGGGG
CGATGTTAAAGTCATCATGGCGACGAACAGAATTGACTCGCTCGACCCAGCGCTGATCAG
AGCAGGTCGAATTGATCGAAAGATTGAGTTCCCGATGCCGGATGAGAAGACAAAGCGTCG
TATATTCAATATACATACAGCTCGTATGACGCTTTCCGACGATGTTAATGTGGACGAACA
TGTTCAAGCCAAAGATGATTTATCCGGGGCCGATATCAAGGCAATTTGCACCGAGGCGGG
TTTACTTGCATTGAGAGAACGTAGAATGAAAGTCACGAGTGAAGATTTCAAAAAGTCCAA
GGAAAATGTTCTTTACCGAAAGAATGAGGGCGCCCCACAAGGATTATATTTATAAACATT
CATACAATTTGTTGAAGATTAAAAACATTGAGATGTTTCGGTTATTAAGTTGTTCAACTG
GACACAAAGTTGCTGCATTGAAAACAGACGTTTATTAAACGTATAAGGATTAGATTAAAC
ACAGGTCATGTTTCGTTTAAAGTTGAAAACATTACAATGTTATAATTATTCAGAAGTTCA
ACTTTATGAAAATATTGCTGCATTAAAACATTGAATAAACTTCGGATCTGCATATCTTTC
TAGTGGTTACAAAATACATATTTGTTTATAAAAAACATTGAAAAATTACACTTATTTTAT
GGTTGAA

InterProScan

PANTHER
26S_subunit_4 (IPR035244) - T[9-451] 3.9E-256
TIGRFAM
26S_Psome_P45-like (IPR005937) - T[86-437] 7.4E-136
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[191-441] 1.35E-65
SMART
AAA+_ATPase (IPR003593) - T[229-368] 2.3E-20
Pfam
ATPase_AAA_core (IPR003959) - T[233-365] 2.9E-43
ProSitePatterns
ATPase_AAA_CS (IPR003960) - T[336-354] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PRS8_HUMAN 51.543 % 347 1.92E-116
PRS4_HUMAN 88.221 % 754 0
PRS6B_HUMAN 50.135 % 394 7.86E-135