- Region 'REG00001280' >
- Transcript 'KH2012:KH.C2.526.v2....' >
- Transcript 'KH2012:KH.L153.45.v1...' >
- Transcript 'KH2012:KH.L52.1.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.L52.1.v1.A.SL1-1
Possible name(s)
CD22; HSPG2; PXDN
Gene model
Location
KhL52 [6,900 / 14,111]
Amino acid sequence
Length: 758
>KH.L52.1.v1.A.SL1-1
ICSYKMNCISPAYTNLIKLWTFAAIIIYGSAVNAQAPFTFSALSLQPPISSVGSTATATC
NVTYIGSAAATLTWKINDVTVEGYQIENGKVPLRANPPSNSYDTSSSTTTSIVNTGDTFP
VSLEIRNVNLTLNQATVSLSCSSFGCITQVQLHIKECSSPTPNNVPVNPSSGVYNTQANF
QCSHGSTLFYVNGTTGNTATKCLATAEWENEKIVQCWAAPTATLIGNNSICAGNIATFQC
NATGGVPSLDRVEIYFNNQNQTLVGNTWTSNPLSSSSNGDIVECRAINSYTAMQEYTNLG
RDSKTLIVLYSATNPKFETKFTDLLINSSSDYLLRSDETLTMNCSADGNPAVTCNWSCSS
TNCGSLPNTCEINNVNVIGSTTITCTVGNGVCGGGTTSITQHITVVPVTRVPYIVVDGST
TTASTITRNKTESLSLACGIENQNEINTKIIWKKDGIIKSGTSLGILNIKNLSPEDTGSY
SCHTSDAFGNFSSSLYVDVYYAAEGFAVNDGTTSHSNICTWYIAPPGPRSCTITFSLNPT
TYTTTLTKDGAMVTNDATNQPQTSTSQSFVFTRNQPSFNDSGNYTLKINNGIFENTFTFN
ISVIYEVQPTPPPPIPPPDNLGVIIGAAVGGVVGFIIIIIFVVYCLRWQINKEHKDKEVT
GRSNIGMEAEHGYYEVADRSPYQNEQVTANIRATQSTNYENLKDNVNVTRDEQGYADIQG
VGPSVVTTTNDGYETFIGRKYENMSRNQQNESQYEHVA
Nucleotide sequence
Length: 2,541
>KH2012:KH.L52.1.v1.A.SL1-1
ATACATTATTATACATAAATTTTGCTATTGTAGTGAATATGTAGTTATAAGATGAATTGT
ATTTCACCAGCATATACTAATCTCATCAAGCTGTGGACCTTTGCTGCTATTATAATATAT
GGTTCTGCAGTAAATGCCCAAGCTCCATTCACATTCTCTGCGTTATCTCTACAACCCCCA
ATATCATCAGTTGGTTCAACTGCCACTGCTACTTGTAATGTGACTTATATTGGGAGTGCA
GCAGCTACATTAACATGGAAAATAAATGATGTTACAGTCGAAGGATACCAGATTGAAAAT
GGAAAAGTTCCACTTCGTGCTAATCCACCTTCTAACAGTTATGACACATCATCAAGCACA
ACAACATCCATTGTTAACACTGGTGACACTTTCCCCGTGAGCCTTGAAATCAGGAATGTT
AATTTGACCCTCAATCAAGCAACAGTTTCTCTTAGTTGTTCGTCATTCGGTTGTATCACT
CAAGTTCAGTTACATATCAAAGAGTGTTCATCTCCAACACCCAACAATGTTCCAGTCAAC
CCATCAAGTGGTGTCTACAACACTCAAGCTAACTTCCAGTGTTCCCATGGTTCAACTTTA
TTTTATGTAAACGGAACAACTGGAAACACTGCAACCAAATGCCTTGCTACAGCAGAGTGG
GAGAATGAAAAGATAGTTCAATGTTGGGCAGCACCAACTGCTACATTGATTGGCAACAAT
TCCATTTGTGCTGGAAACATTGCTACTTTCCAATGTAATGCAACTGGGGGTGTCCCTTCT
TTGGATAGAGTTGAAATTTATTTCAATAATCAAAACCAAACGTTGGTTGGAAACACATGG
ACAAGCAATCCACTTAGCAGTTCAAGCAATGGAGATATAGTGGAATGTAGAGCTATAAAT
AGCTACACTGCCATGCAGGAATATACAAACTTGGGAAGAGACAGCAAGACATTGATTGTT
CTTTATTCAGCAACGAATCCAAAGTTTGAAACCAAATTTACGGATCTGTTGATCAATTCA
AGCAGTGATTACCTGCTTAGATCAGATGAGACGTTGACCATGAATTGCTCAGCTGATGGA
AACCCTGCTGTAACTTGTAACTGGTCTTGTTCTTCTACAAATTGTGGTAGTTTACCAAAC
ACTTGTGAGATCAACAATGTAAATGTTATTGGTTCCACAACCATCACATGTACGGTTGGT
AATGGTGTTTGTGGAGGTGGTACTACCAGCATTACTCAACACATAACAGTGGTTCCTGTA
ACTCGAGTACCATATATAGTGGTTGATGGATCAACAACAACAGCTTCTACCATCACAAGA
AACAAAACAGAAAGTTTAAGTTTAGCTTGTGGAATTGAAAACCAAAATGAAATAAACACA
AAGATAATTTGGAAGAAAGATGGAATCATAAAGTCAGGAACAAGTTTGGGTATTCTAAAC
ATAAAAAATCTATCCCCAGAAGATACAGGATCATATTCTTGTCACACAAGCGATGCTTTT
GGAAATTTTTCATCATCTTTATACGTTGATGTATATTATGCAGCTGAAGGATTTGCAGTG
AATGATGGTACAACCAGCCACAGTAACATATGTACATGGTATATTGCCCCACCTGGTCCA
AGATCATGTACCATCACATTCTCACTTAACCCAACTACTTATACAACCACTTTAACAAAG
GATGGAGCCATGGTAACGAATGATGCAACTAATCAGCCACAAACATCAACATCACAAAGT
TTTGTTTTTACTCGAAACCAGCCGTCATTCAATGATAGTGGGAATTATACATTGAAAATC
AACAATGGAATATTTGAAAATACTTTCACTTTCAATATATCAGTGATATATGAAGTGCAA
CCTACACCCCCACCACCCATCCCACCACCAGATAACTTGGGTGTTATAATTGGAGCTGCA
GTTGGTGGGGTGGTGGGCTTTATAATAATCATCATATTTGTGGTATATTGCTTAAGGTGG
CAAATCAATAAAGAACACAAAGATAAAGAAGTTACAGGAAGAAGCAACATTGGAATGGAA
GCAGAGCATGGTTACTATGAAGTTGCTGATCGATCACCATATCAAAATGAACAAGTAACT
GCTAACATACGTGCAACACAATCAACAAATTATGAAAACCTGAAGGACAATGTCAATGTA
ACAAGAGATGAGCAAGGTTATGCTGATATACAAGGTGTGGGGCCAAGTGTTGTAACAACA
ACAAACGATGGATACGAAACTTTTATTGGAAGGAAATACGAAAATATGTCGCGTAATCAA
CAAAATGAAAGTCAATATGAACATGTGGCTTGACAATTTTAAACCATAAGAGCTAGGTCG
TCTTTTCTTAAGCCAGGTTCTGACTATTTCACATTTATAGTGTTTGTTGGTGCACACATT
ATATCTTTTATGTAAACATTTAATATCATTGTTCTTTTTAATAACGTTTTGTTGGGGGGG
GGTATATTTTATTTTTTCGTTTGATATATTATCATTCTGTTTGAATTTAGTCCAAATATA
TACATGTTTTCCGTTTTACAA
| SMART |
Ig_sub (IPR003599) - T[45-155] 22.0 - T[329-406] 69.0 - T[423-500] 1.5E-6 |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[155-218] 8.095 |
| PANTHER |
Myelin_P0-rel (IPR000920) - T[165-314] 1.4E-161 - T[341-380] 1.4E-161 - T[386-493] 1.4E-161 - T[498-745] 1.4E-161 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[315-404] 7.413 - T[412-498] 11.315 |
| Gene3D |
Ig-like_fold (IPR013783) - T[411-504] 3.6E-9 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[423-503] 3.13E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|