- Transcript 'KH2012:KH.C8.476.v1....' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.L8.22.v1.R...'
Transcript Model
Transcript Id
KH2012:KH.L8.22.v1.R.ND1-1
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
KhL8 [159,563 / 174,404]
Amino acid sequence
Length: 1,010
>KH.L8.22.v1.R.ND1-1
ETMPALDIHGIKVEFPFTAYEVQKSYMTKVIQALNTHQNAALESPTGTGKTLCLLCSTLA
WRRQHLNELKKHTNPVSQEDAWSSSEKSKDSAIPAPKIIYASRTHSQISQVVKELKRTDY
GKDITISILGSREQMCIHPEVSKQTSNQAMVHMCRGKINKHTCQFYNNVEDAKKNNIFTT
KVMDIEELVTVGKSRTVCPYYSEREVSKQNECGIIFTPYNYLLDRKSRATNNLEIRGNIV
IFDEAHNLEKLCEESTSFDLTSLEVAKCIEEVGDVLDAATKFEESGTVADGHENGESLSL
SEFKSQDLAIMKSVFIALEKLLDQVELNKDTKSRSEPGKFMFEFLSKINLTESTYQIMLD
VVDKISTYLSTLSNSLRIRGAALQKFSEIVKVAFSWMEDETKGHMTRAQRMQELCMCYRV
HICENAETGKSTDVWKRSANTSSKPGRTISFWCFSPGYAMTNLVKCGVRNLILTSGTLSP
LESFTSELQIDFPITLENDHVIDKHQVFVITLTHGKKGGLLNSTFKTRKDVNQVQELGLT
VADMIAAAPGGALVFFPSYSAMAEYLTIWKENSNVMTLVEKVKPCTVEPKNKHELRTAID
KYYTDVNTGGGTFLAVCRGKVSEGLDFSDDNGRTVIIVGIPYPPAFDPRIKMKMAFLDDL
RTKGATSLLTGREWYRQQACRAVNQAIGRVIRHRYDYGAIVLCDHRYAGRDQLSELPKWV
QPHVVKFNNAAKCIRRLRSFFCSVNEKEKNRLKEAYEYCEFDNKAETSSCKNLSPKSDIA
TNVKTLNSNKRAKVCIKYSESDQHNNYDMYMSPVSISQPTSTKKRKISSTEKSGPAKQKK
SLLDALDNIVSDDEEISDENNSAQNNMPTATTIPDIRKFKQRKKIIVKKKGTEFKTSKEN
TKQDSSNNSKQALGFDSTRLTSGPYQYYIECTKSTLSTPLYLEFKKAARDYTKNGDVETV
FNSLHDVFMVVGSQHPELLSSFVRFIRAEHRAQYTKLCSARTKQSSDTPV
Nucleotide sequence
Length: 3,351
>KH2012:KH.L8.22.v1.R.ND1-1
CTTTAAAGATAAATGCAATAAACAAATAGTTTGATTTTTGGCCCCTGGATGTGCGATGTT
TGTTTATTTTTTGTTTTTTGATATCTAATTAAGAAACCATGCCAGCTCTTGACATTCACG
GTATTAAGGTGGAATTTCCATTCACCGCTTACGAGGTGCAGAAGTCGTACATGACAAAAG
TTATTCAAGCCTTAAACACACATCAGAATGCTGCTCTTGAATCTCCAACTGGTACCGGGA
AAACACTTTGCTTGCTTTGTTCTACATTAGCATGGAGGAGGCAACATTTAAATGAGTTGA
AGAAACATACCAATCCTGTATCACAGGAGGACGCCTGGTCTTCATCAGAAAAGTCAAAGG
ATTCAGCGATTCCAGCTCCCAAAATAATTTATGCTTCAAGAACACATTCACAAATTTCTC
AAGTTGTAAAAGAGCTGAAACGAACAGATTATGGAAAAGATATAACCATCAGCATACTTG
GATCACGGGAACAGATGTGTATCCATCCTGAGGTTTCCAAACAAACAAGCAACCAAGCCA
TGGTCCACATGTGCAGGGGAAAGATAAACAAACACACTTGTCAGTTTTATAACAATGTTG
AAGATGCAAAAAAGAACAACATTTTTACAACTAAAGTGATGGATATTGAAGAGCTCGTAA
CAGTCGGCAAATCAAGAACTGTTTGTCCTTATTACTCCGAACGTGAAGTATCAAAACAAA
ACGAGTGTGGTATTATTTTCACTCCATATAATTATCTCCTGGATCGAAAATCACGAGCCA
CCAACAATCTTGAAATTCGAGGGAATATCGTTATTTTTGACGAAGCTCATAATCTTGAAA
AGTTATGCGAAGAGTCGACCTCATTTGACCTCACATCTCTGGAGGTTGCGAAGTGCATAG
AAGAGGTTGGTGATGTCCTTGATGCTGCCACGAAATTCGAAGAGTCAGGAACAGTTGCTG
ACGGTCACGAAAACGGAGAGTCTTTATCTTTGAGTGAATTTAAAAGTCAAGACCTTGCAA
TAATGAAGTCAGTTTTTATCGCCCTTGAAAAACTTTTGGATCAAGTTGAGTTAAATAAAG
ATACCAAGAGTCGATCAGAGCCAGGAAAGTTCATGTTCGAATTTCTCTCCAAAATTAACC
TCACAGAATCTACTTATCAAATAATGCTTGATGTTGTGGATAAAATAAGCACCTATCTGT
CTACTTTGAGCAACTCGCTTCGTATACGAGGTGCTGCCTTACAGAAATTCTCCGAAATTG
TTAAAGTTGCATTTTCTTGGATGGAAGATGAAACAAAAGGTCACATGACCCGAGCTCAGC
GAATGCAAGAGCTATGCATGTGTTATCGTGTGCATATATGTGAGAACGCTGAAACTGGAA
AGTCAACTGATGTCTGGAAAAGATCTGCCAATACTTCTTCTAAACCAGGTCGCACAATAT
CATTCTGGTGTTTCAGTCCTGGTTACGCGATGACCAATTTGGTAAAATGTGGGGTTCGAA
ATCTTATTTTAACCAGCGGGACTTTATCTCCGCTGGAATCTTTCACCAGTGAACTACAAA
TAGATTTTCCGATCACGCTGGAAAATGATCACGTTATAGACAAACACCAAGTGTTTGTGA
TCACATTAACTCATGGGAAAAAGGGAGGTTTATTAAATTCAACATTCAAGACCAGAAAGG
ATGTGAACCAAGTGCAAGAACTCGGACTTACAGTTGCTGACATGATCGCTGCAGCACCAG
GGGGCGCTCTTGTGTTCTTTCCTTCGTATTCTGCGATGGCTGAATATTTGACAATATGGA
AAGAAAACTCTAACGTAATGACGCTTGTGGAAAAAGTAAAACCCTGCACTGTTGAACCCA
AGAATAAACATGAGCTAAGAACTGCAATTGACAAATATTATACAGACGTCAACACTGGGG
GAGGAACTTTTCTTGCTGTTTGTCGAGGCAAAGTTTCAGAAGGACTTGATTTTTCTGACG
ATAACGGACGAACAGTGATCATCGTTGGAATCCCGTATCCTCCTGCTTTTGATCCGAGAA
TTAAGATGAAGATGGCTTTCCTGGATGACCTCAGGACCAAAGGAGCAACAAGTTTACTGA
CTGGTAGGGAATGGTACAGACAACAAGCTTGCAGAGCTGTCAATCAAGCTATTGGAAGAG
TCATTCGACATAGATATGATTATGGGGCAATTGTTTTATGCGATCATAGATACGCAGGCA
GAGATCAACTAAGTGAGCTTCCAAAGTGGGTTCAACCTCACGTAGTTAAATTCAACAACG
CAGCTAAATGCATCAGAAGACTTCGTTCTTTCTTTTGCTCCGTCAACGAAAAGGAAAAAA
ATCGTTTAAAGGAAGCTTATGAATATTGTGAGTTTGACAACAAAGCCGAAACTTCTTCAT
GTAAAAATCTTTCCCCAAAATCTGATATCGCAACAAATGTAAAAACTTTAAATTCAAATA
AAAGAGCCAAGGTGTGCATCAAGTACAGTGAAAGTGACCAACACAATAATTATGACATGT
ATATGTCCCCTGTTTCAATTTCTCAGCCTACCTCAACGAAAAAAAGGAAAATTTCCTCCA
CAGAAAAAAGTGGCCCTGCCAAACAGAAGAAAAGTTTGCTTGATGCTTTGGATAATATTG
TGAGCGATGATGAAGAAATTTCGGATGAAAATAATTCTGCCCAAAATAATATGCCCACTG
CCACTACAATACCTGACATAAGGAAATTTAAACAAAGGAAAAAGATCATTGTAAAGAAAA
AAGGAACAGAGTTTAAAACGTCAAAAGAAAATACAAAACAAGATTCTTCGAACAACTCAA
AACAAGCATTAGGTTTTGATAGCACACGTTTGACAAGCGGGCCATACCAGTATTACATTG
AATGCACCAAATCAACACTAAGCACTCCATTATATCTTGAGTTTAAAAAAGCTGCACGAG
ATTATACAAAGAATGGTGACGTTGAAACGGTGTTTAATTCCCTGCACGATGTATTCATGG
TGGTTGGCTCGCAGCACCCAGAGTTGTTAAGCAGCTTCGTTCGCTTCATACGAGCCGAAC
ATCGGGCCCAATACACCAAGCTATGTTCAGCGCGGACAAAACAAAGCTCAGATACACCGG
TGTAACAACGGCTGGCGTGTAGAGGGCCTGTTCGAGTTGCTGAGGCTGCGAAGACCTGTC
CAATCGCACACGGGCAACTTAGCGTCGCTGGGTGTACGGTTTCCATTATGTCAGTTGGAC
CAATTCAAAGCGAGCGATTGAAAATCGTTCGGAATCCAACGACACCTGATATAGCTTGTG
TACCGGGTTTCATAAGCGCATTCTAAATAAAAATATTCCTCGAAGAATAAA
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[9-307] 27.585 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[11-289] 4.3E-54 |
| TIGRFAM |
Rad3/Chl1-like (IPR013020) - T[13-735] 4.5E-147 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[33-64] 1.9E-13 - T[94-116] 1.9E-13 - T[194-268] 1.9E-13 - T[467-481] 1.9E-13 - T[519-702] 1.9E-13 |
| Pfam |
DEAD_2 (IPR010614) - T[100-262] 6.2E-52 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[543-722] 1.3E-51 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[559-709] 3.0E-51 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX12_HUMAN | 23.874 % | 224 | 8.79E-61 |
| FANCJ_HUMAN | 31.06 % | 316 | 5.84E-91 |
| RTEL1_HUMAN | 37.5 % | 675 | 0 |