- Transcript 'KH2012:KH.C1.380.v1....' >
- Transcript 'KH2012:KH.L8.22.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.L8.22.v2.A.SL2-1
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
KhL8 [159,794 / 174,404]
Amino acid sequence
Length: 1,009
>KH.L8.22.v2.A.SL2-1
TMPALDIHGIKVEFPFTAYEVQKSYMTKVIQALNTHQNAALESPTGTGKTLCLLCSTLAW
RRQHLNELKKHTNPVSQEDAWSSSEKSKDSAIPAPKIIYASRTHSQISQVVKELKRTDYG
KDITISILGSREQMCIHPEVSKQTSNQAMVHMCRGKINKHTCQFYNNVEDAKKNNIFTTK
VMDIEELVTVGKSRTVCPYYSEREVSKQNECGIIFTPYNYLLDRKSRATNNLEIRGNIVI
FDEAHNLEKLCEESTSFDLTSLEVAKCIEEVGDVLDAATKFEESGTVADGHENGESLSLS
EFKSQDLAIMKSVFIALEKLLDQVELNKDTKSRSEPGKFMFEFLSKINLTESTYQIMLDV
VDKISTYLSTLSNSLRIRGAALQKFSEIVKVAFSWMEDETKGHMTRAQRMQELCMCYRVH
ICENAETGKSTDVWKRSANTSSKPGRTISFWCFSPGYAMTNLVKCGVRNLILTSGTLSPL
ESFTSELQIDFPITLENDHVIDKHQVFVITLTHGKKGGLLNSTFKTRKDVNQVQELGLTV
ADMIAAAPGGALVFFPSYSAMAEYLTIWKENSNVMTLVEKVKPCTVEPKNKHELRTAIDK
YYTDVNTGGGTFLAVCRGKVSEGLDFSDDNGRTVIIVGIPYPPAFDPRIKMKMAFLDDLR
TKGATSLLTGREWYRQQACRAVNQAIGRVIRHRYDYGAIVLCDHRYAGRDQLSELPKWVQ
PHVVKFNNAAKCIRRLRSFFCSVNEKEKNRLKEAYEYCEFDNKAETSSCKNLSPKSDIAT
NVKTLNSNKRAKVCIKYSESDQHNNYDMYMSPVSISQPTSTKKRKISSTEKSGPAKQKKS
LLDALDNIVSDDEEISDENNSAQNNMPTATTIPDIRKFKQRKKIIVKKKGTEFKTSKENT
KQDSSNNSKQALGFDSTRLTSGPYQYYIECTKSTLSTPLYLEFKKAARDYTKNGDVETVF
NSLHDVFMVVGSQHPELLSSFVRFIRAEHRAQYTKLCSARTKQSSDTPV
Nucleotide sequence
Length: 3,258
>KH2012:KH.L8.22.v2.A.SL2-1
AAACCATGCCAGCTCTTGACATTCACGGTATTAAGGTGGAATTTCCATTCACCGCTTACG
AGGTGCAGAAGTCGTACATGACAAAAGTTATTCAAGCCTTAAACACACATCAGAATGCTG
CTCTTGAATCTCCAACTGGTACCGGGAAAACACTTTGCTTGCTTTGTTCTACATTAGCAT
GGAGGAGGCAACATTTAAATGAGTTGAAGAAACATACCAATCCTGTATCACAGGAGGACG
CCTGGTCTTCATCAGAAAAGTCAAAGGATTCAGCGATTCCAGCTCCCAAAATAATTTATG
CTTCAAGAACACATTCACAAATTTCTCAAGTTGTAAAAGAGCTGAAACGAACAGATTATG
GAAAAGATATAACCATCAGCATACTTGGATCACGGGAACAGATGTGTATCCATCCTGAGG
TTTCCAAACAAACAAGCAACCAAGCCATGGTCCACATGTGCAGGGGAAAGATAAACAAAC
ACACTTGTCAGTTTTATAACAATGTTGAAGATGCAAAAAAGAACAACATTTTTACAACTA
AAGTGATGGATATTGAAGAGCTCGTAACAGTCGGCAAATCAAGAACTGTTTGTCCTTATT
ACTCCGAACGTGAAGTATCAAAACAAAACGAGTGTGGTATTATTTTCACTCCATATAATT
ATCTCCTGGATCGAAAATCACGAGCCACCAACAATCTTGAAATTCGAGGGAATATCGTTA
TTTTTGACGAAGCTCATAATCTTGAAAAGTTATGCGAAGAGTCGACCTCATTTGACCTCA
CATCTCTGGAGGTTGCGAAGTGCATAGAAGAGGTTGGTGATGTCCTTGATGCTGCCACGA
AATTCGAAGAGTCAGGAACAGTTGCTGACGGTCACGAAAACGGAGAGTCTTTATCTTTGA
GTGAATTTAAAAGTCAAGACCTTGCAATAATGAAGTCAGTTTTTATCGCCCTTGAAAAAC
TTTTGGATCAAGTTGAGTTAAATAAAGATACCAAGAGTCGATCAGAGCCAGGAAAGTTCA
TGTTCGAATTTCTCTCCAAAATTAACCTCACAGAATCTACTTATCAAATAATGCTTGATG
TTGTGGATAAAATAAGCACCTATCTGTCTACTTTGAGCAACTCGCTTCGTATACGAGGTG
CTGCCTTACAGAAATTCTCCGAAATTGTTAAAGTTGCATTTTCTTGGATGGAAGATGAAA
CAAAAGGTCACATGACCCGAGCTCAGCGAATGCAAGAGCTATGCATGTGTTATCGTGTGC
ATATATGTGAGAACGCTGAAACTGGAAAGTCAACTGATGTCTGGAAAAGATCTGCCAATA
CTTCTTCTAAACCAGGTCGCACAATATCATTCTGGTGTTTCAGTCCTGGTTACGCGATGA
CCAATTTGGTAAAATGTGGGGTTCGAAATCTTATTTTAACCAGCGGGACTTTATCTCCGC
TGGAATCTTTCACCAGTGAACTACAAATAGATTTTCCGATCACGCTGGAAAATGATCACG
TTATAGACAAACACCAAGTGTTTGTGATCACATTAACTCATGGGAAAAAGGGAGGTTTAT
TAAATTCAACATTCAAGACCAGAAAGGATGTGAACCAAGTGCAAGAACTCGGACTTACAG
TTGCTGACATGATCGCTGCAGCACCAGGGGGCGCTCTTGTGTTCTTTCCTTCGTATTCTG
CGATGGCTGAATATTTGACAATATGGAAAGAAAACTCTAACGTAATGACGCTTGTGGAAA
AAGTAAAACCCTGCACTGTTGAACCCAAGAATAAACATGAGCTAAGAACTGCAATTGACA
AATATTATACAGACGTCAACACTGGGGGAGGAACTTTTCTTGCTGTTTGTCGAGGCAAAG
TTTCAGAAGGACTTGATTTTTCTGACGATAACGGACGAACAGTGATCATCGTTGGAATCC
CGTATCCTCCTGCTTTTGATCCGAGAATTAAGATGAAGATGGCTTTCCTGGATGACCTCA
GGACCAAAGGAGCAACAAGTTTACTGACTGGTAGGGAATGGTACAGACAACAAGCTTGCA
GAGCTGTCAATCAAGCTATTGGAAGAGTCATTCGACATAGATATGATTATGGGGCAATTG
TTTTATGCGATCATAGATACGCAGGCAGAGATCAACTAAGTGAGCTTCCAAAGTGGGTTC
AACCTCACGTAGTTAAATTCAACAACGCAGCTAAATGCATCAGAAGACTTCGTTCTTTCT
TTTGCTCCGTCAACGAAAAGGAAAAAAATCGTTTAAAGGAAGCTTATGAATATTGTGAGT
TTGACAACAAAGCCGAAACTTCTTCATGTAAAAATCTTTCCCCAAAATCTGATATCGCAA
CAAATGTAAAAACTTTAAATTCAAATAAAAGAGCCAAGGTGTGCATCAAGTACAGTGAAA
GTGACCAACACAATAATTATGACATGTATATGTCCCCTGTTTCAATTTCTCAGCCTACCT
CAACGAAAAAAAGGAAAATTTCCTCCACAGAAAAAAGTGGCCCTGCCAAACAGAAGAAAA
GTTTGCTTGATGCTTTGGATAATATTGTGAGCGATGATGAAGAAATTTCGGATGAAAATA
ATTCTGCCCAAAATAATATGCCCACTGCCACTACAATACCTGACATAAGGAAATTTAAAC
AAAGGAAAAAGATCATTGTAAAGAAAAAAGGAACAGAGTTTAAAACGTCAAAAGAAAATA
CAAAACAAGATTCTTCGAACAACTCAAAACAAGCATTAGGTTTTGATAGCACACGTTTGA
CAAGCGGGCCATACCAGTATTACATTGAATGCACCAAATCAACACTAAGCACTCCATTAT
ATCTTGAGTTTAAAAAAGCTGCACGAGATTATACAAAGAATGGTGACGTTGAAACGGTGT
TTAATTCCCTGCACGATGTATTCATGGTGGTTGGCTCGCAGCACCCAGAGTTGTTAAGCA
GCTTCGTTCGCTTCATACGAGCCGAACATCGGGCCCAATACACCAAGCTATGTTCAGCGC
GGACAAAACAAAGCTCAGATACACCGGTGTAACAACGGCTGGCGTGTAGAGGGCCTGTTC
GAGTTGCTGAGGCTGCGAAGACCTGTCCAATCGCACACGGGCAACTTAGCGTCGCTGGGT
GTACGGTTTCCATTATGTCAGTTGGACCAATTCAAAGCGAGCGATTGAAAATCGTTCGGA
ATCCAACGACACCTGATATAGCTTGTGTACCGGGTTTCATAAGCGCATTCTAAATAAAAA
TATTCCTCGAAGAATAAA
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[8-306] 27.585 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[10-288] 4.3E-54 |
| TIGRFAM |
Rad3/Chl1-like (IPR013020) - T[12-734] 4.5E-147 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[32-63] 1.9E-13 - T[93-115] 1.9E-13 - T[193-267] 1.9E-13 - T[466-480] 1.9E-13 - T[518-701] 1.9E-13 |
| Pfam |
DEAD_2 (IPR010614) - T[99-261] 6.2E-52 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[542-721] 1.3E-51 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[558-708] 3.0E-51 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX12_HUMAN | 23.874 % | 224 | 9.48E-61 |
| FANCJ_HUMAN | 31.205 % | 315 | 6.9E-91 |
| RTEL1_HUMAN | 37.5 % | 675 | 0 |