- Transcript 'KH2012:KH.L84.6.v1.R...'
Transcript Model
Transcript Id
KH2012:KH.L84.6.v1.R.ND1-1
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
KhL84 [114,000 / 122,909]
Amino acid sequence
Length: 882
>KH.L84.6.v1.R.ND1-1
ENCIMPLRLDIKRKLNARSDRVKCVDLHPSEPWMLVSLYNGNVHIWNHETQLLVKSFEVC
DLPVRATRFVPRKNWVITGSDDMQIRVFNYNTLERSHAFEAHTDYIRSIAVHPTQPYILT
SSDDMLIKLWDWDKKWSCAQVFEGHTHYVMQIVINPKDNNQFASASLDCSIKVWQLGSAT
PNFTLTGHDKGVNCVDYYNGGDKPYLISGADDRLTKIWDYQNKTCVQTLEGHSQNIVCVS
FHPELPIIMTGSEDGTVKIWHANTYRLETTLNYGMERVWCISAMKGSNNIALGYDEGSIM
IKLGREEPAMSMDSNGKIIWAKHSEIQQANLKAMTEQDLKDGERLQLAVKDMGSCEVYPQ
TLKHNANGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWAQDSSEYAVRESGTSVKLFK
NFKERKSFKPDFGAEGIYGGHLLGVRTSQGLAFYDWENLELIRRIEINPKNVIWSDNGDL
VCITSDESFYILKYDQSKIEESKENTDLVTEDGITDAFSDDIGEIEEVVKTGLWVGDCFI
YTNSVNRLNYYVGGEIVTIAHLDRVLYLLGYIPSDNRLYLGDKELNVVSYSLLLSVLEYQ
TAVMREDFETADKVLPSIPKEQRTRVAHFLEKQGFKPQAMAVTSDPEHKFELALGLGDLK
VAYQLAQEAQAEQKWKQLAELATRKCEFGLAQECLRQAEDFGGLLLLATSAGNADMVKSL
ADGAKAGGKNNVAFLSYFITGQTKQCLDLLINTNRLPEAAFFARTYLPSEMSRVVQLWKE
NLSSTNKKAADSLADPEKYENLFPNLAESLVAEKFLNATEELRPASHYPVTPSNDDRDVL
EEAAGFESGNADKMVEEEDVVPEVSIPLIKDEDDGNTVKHNV
Nucleotide sequence
Length: 3,418
>KH2012:KH.L84.6.v1.R.ND1-1
ATTGTTTTCCTTGTTAAAAAATTTTAATAAAAGAAGTAACACGCTGCTAATTGAACTGCC
AACATCGCCATAAAATCTCCGGTTCATTGTTTAGGAATTTCATAAGAAAATTGTATAATG
CCTCTGCGCTTGGATATCAAGCGAAAACTTAACGCAAGATCGGATCGTGTAAAATGTGTT
GATTTACATCCTAGTGAACCATGGATGTTGGTATCACTTTATAATGGCAATGTTCACATA
TGGAATCATGAAACTCAACTTTTGGTCAAATCATTTGAAGTATGTGACCTTCCTGTAAGA
GCAACACGATTTGTTCCTCGGAAAAACTGGGTCATCACTGGATCGGATGACATGCAAATA
CGCGTTTTCAACTACAACACCCTGGAACGTTCTCATGCGTTTGAAGCTCACACAGATTAC
ATTCGATCAATTGCTGTCCACCCCACCCAACCCTACATATTAACCAGCAGTGATGACATG
CTGATTAAACTTTGGGATTGGGACAAGAAATGGAGTTGTGCTCAAGTATTTGAGGGCCAC
ACTCACTACGTGATGCAAATTGTCATCAATCCCAAGGATAATAATCAATTCGCGAGTGCA
TCACTTGACTGCAGTATCAAAGTATGGCAACTTGGTTCAGCAACTCCAAACTTTACATTA
ACTGGTCATGATAAAGGTGTCAACTGCGTGGATTACTACAATGGTGGTGACAAACCTTAC
CTTATTTCTGGCGCTGACGATCGCTTAACAAAAATATGGGATTATCAGAACAAGACATGT
GTGCAGACATTGGAGGGTCACTCACAGAACATCGTGTGTGTAAGCTTCCACCCTGAACTT
CCCATCATCATGACTGGTTCCGAGGATGGTACTGTTAAGATTTGGCACGCCAACACATAT
AGACTGGAAACCACACTTAACTATGGTATGGAGCGCGTGTGGTGCATCTCTGCTATGAAG
GGTTCGAATAACATTGCGCTCGGTTACGATGAGGGAAGTATCATGATTAAACTTGGACGG
GAAGAACCTGCAATGTCCATGGACAGCAACGGGAAAATAATTTGGGCCAAACATTCCGAG
ATTCAACAAGCAAACTTGAAGGCTATGACTGAACAAGACTTGAAGGATGGAGAACGTCTC
CAGCTTGCAGTGAAAGACATGGGAAGTTGTGAAGTTTATCCACAAACTTTAAAACACAAC
GCAAATGGAAGGTTTGTTGTAGTGTGTGGAGATGGAGAATACATCATCTACACTGCGATG
GCTTTGAGAAACAAAGCCTTTGGTTCGGCTCTTGAGTTTACATGGGCCCAAGATTCATCT
GAATATGCAGTGAGGGAAAGTGGAACATCCGTGAAACTTTTCAAAAACTTTAAGGAACGA
AAATCTTTCAAACCAGATTTTGGTGCAGAAGGAATATATGGAGGCCATCTACTTGGAGTT
CGAACATCACAAGGACTTGCATTTTATGATTGGGAGAACCTTGAACTTATTAGAAGAATT
GAAATCAACCCTAAAAATGTGATTTGGTCGGATAACGGTGACTTGGTTTGTATTACATCC
GATGAATCATTTTACATCCTTAAGTATGATCAATCTAAGATTGAAGAATCAAAGGAGAAT
ACCGACCTGGTTACTGAAGATGGGATAACTGATGCATTCAGCGATGATATTGGAGAAATT
GAAGAAGTTGTGAAGACTGGTTTATGGGTTGGCGATTGTTTCATATACACCAACTCTGTC
AACAGATTAAATTATTATGTTGGTGGTGAGATCGTCACCATTGCTCATTTGGATCGGGTA
TTATATCTACTCGGGTATATTCCAAGTGACAACCGACTTTACCTCGGTGATAAAGAACTT
AATGTGGTGAGTTACTCTCTGCTGCTGTCGGTGCTTGAATACCAAACTGCGGTGATGCGA
GAAGATTTTGAGACTGCTGATAAAGTTCTTCCTTCTATTCCAAAAGAGCAAAGAACAAGA
GTTGCACATTTTCTTGAGAAACAAGGATTTAAACCGCAAGCGATGGCTGTAACAAGTGAC
CCAGAACACAAGTTTGAATTGGCTCTTGGTCTGGGTGATCTCAAGGTAGCTTACCAACTT
GCACAGGAGGCACAGGCTGAGCAAAAATGGAAGCAACTTGCTGAGCTGGCTACACGGAAA
TGTGAGTTTGGACTTGCACAGGAGTGCTTACGTCAAGCAGAAGACTTCGGTGGTTTGCTT
TTGCTTGCGACATCAGCTGGTAACGCTGACATGGTTAAGTCGTTGGCAGATGGAGCTAAA
GCAGGAGGAAAAAATAATGTGGCTTTCCTAAGTTACTTTATTACTGGCCAAACTAAGCAG
TGTCTCGATCTGCTGATCAACACAAACAGACTTCCTGAAGCTGCTTTCTTTGCTCGAACT
TATCTTCCAAGTGAAATGAGCAGGGTTGTTCAATTATGGAAAGAAAATCTTAGTTCAACA
AATAAAAAGGCAGCTGATTCACTCGCTGACCCAGAAAAATATGAGAACTTGTTTCCAAAC
TTGGCAGAAAGTTTAGTGGCCGAGAAATTTCTTAATGCAACTGAGGAGTTGAGACCTGCT
TCCCATTACCCTGTCACACCGTCAAATGATGACCGCGATGTACTTGAAGAGGCTGCTGGG
TTTGAATCAGGAAATGCAGATAAAATGGTTGAGGAGGAGGACGTTGTTCCGGAGGTTTCT
ATTCCACTGATAAAGGATGAAGATGACGGAAATACAGTCAAACACAACGTATGATAAACT
CACAGTGAGGGAGTGAGTAGCAACTAACCACAATATTCTACCAGGATGAGCCTTGTGCTG
GTGAAGAAGAGGAAGATGAGACACCAGATGTGGAAACACAAGAACAACAGGACCTTGAGC
TGGACATTGAAAATCTGGAGTTAGACGATGATATAGATACAAGTGGTGTGAATCTTGATG
ATGAACTCTTGGATGATTAACCAGATCTCTAGATCTTCATATCATTGACTTATTTATCTC
GTATAGAAGCGCTTAAGTTTTGCTGCAGAATTTTCATTTAAGTGAAACTTGTTTACCGGT
GTTCAGAATTAGCAGTTAAATTTGTAGCGTTTCTAATCTTTAATATTGTTGCGCCCGTAT
TCTTATAAGAGTTTGGTATAGTTGGGAAACTAGCTGGTATTTTGTACATACATTATCTAC
ATTACCATGCCTTATTGTGTAGGATTCAACACAACTTGCAAGCATATTGAATATTGATGT
GTAGTCAAATAACATTCACAAAAATAGTTTTGTGCAATATCTAACATTTCAGTCACACCT
GGTTTATTACTTTGCCAACATTGTTTGGGTTTTTAATTGTAACTTAAAATATGAATATTG
ACATGGTGCATCGCTCCATTGCAAAAATACAGATATATGTACGACCAATGCTCATTTA
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[5-301] 3.3E-80 |
| PIRSF |
COPB2 (IPR016453) - T[6-880] 0.0 |
| SMART |
WD40_repeat (IPR001680) - T[8-47] 0.084 - T[50-89] 0.026 - T[92-131] 2.6E-8 - T[135-175] 1.2E-7 - T[178-219] 3.6E-6 - T[222-261] 1.0E-10 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[15-304] 3.2E-108 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[15-270] 49.672 |
| Pfam |
WD40_repeat (IPR001680) - T[20-47] 0.16 - T[64-89] 0.23 - T[96-131] 3.3E-5 - T[136-174] 0.02 - T[181-219] 1.9E-5 - T[224-260] 4.6E-9 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[99-131] 13.55 - T[142-184] 11.31 - T[185-228] 12.046 - T[229-270] 16.19 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[118-132] 5.9E-5 - T[206-220] 5.9E-5 - T[248-262] 5.9E-5 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[323-767] 1.7E-167 |
| SUPERFAMILY |
Quino_amine_DH_bsu (IPR011044) - T[341-590] 5.73E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 25.062 % | 245 | 1.07E-67 |
| COPB2_HUMAN | 75.866 % | 1427 | 0 |
| LIS1_HUMAN | 24.815 % | 111 | 5.92E-26 |