- Transcript 'KH2012:KH.L84.6.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.L84.6.v2.A.nonSL3-1
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
KhL84 [114,000 / 122,939]
Amino acid sequence
Length: 942
>KH.L84.6.v2.A.nonSL3-1
ENCIMPLRLDIKRKLNARSDRVKCVDLHPSEPWMLVSLYNGNVHIWNHETQLLVKSFEVC
DLPVRATRFVPRKNWVITGSDDMQIRVFNYNTLERSHAFEAHTDYIRSIAVHPTQPYILT
SSDDMLIKLWDWDKKWSCAQVFEGHTHYVMQIVINPKDNNQFASASLDCSIKVWQLGSAT
PNFTLTGHDKGVNCVDYYNGGDKPYLISGADDRLTKIWDYQNKTCVQTLEGHSQNIVCVS
FHPELPIIMTGSEDGTVKIWHANTYRLETTLNYGMERVWCISAMKGSNNIALGYDEGSIM
IKLGREEPAMSMDSNGKIIWAKHSEIQQANLKAMTEQDLKDGERLQLAVKDMGSCEVYPQ
TLKHNANGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWAQDSSEYAVRESGTSVKLFK
NFKERKSFKPDFGAEGIYGGHLLGVRTSQGLAFYDWENLELIRRIEINPKNVIWSDNGDL
VCITSDESFYILKYDQSKIEESKENTDLVTEDGITDAFSDDIGEIEEVVKTGLWVGDCFI
YTNSVNRLNYYVGGEIVTIAHLDRVLYLLGYIPSDNRLYLGDKELNVVSYSLLLSVLEYQ
TAVMREDFETADKVLPSIPKEQRTRVAHFLEKQGFKPQAMAVTSDPEHKFELALGLGDLK
VAYQLAQEAQAEQKWKQLAELATRKCEFGLAQECLRQAEDFGGLLLLATSAGNADMVKSL
ADGAKAGGKNNVAFLSYFITGQTKQCLDLLINTNRLPEAAFFARTYLPSEMSRVVQLWKE
NLSSTNKKAADSLADPEKYENLFPNLAESLVAEKFLNATEELRPASHYPVTPSNDDRDVL
EEAAGFESGNADKMVEEEDVVPEVSIPLIKDEDDGNTVKDEPCAGEEEEDETPDVETQEQ
QVPQAPSSLDEYDDLELDIENLELDDDIDTSGVNLDDELLDD
Nucleotide sequence
Length: 3,422
>KH2012:KH.L84.6.v2.A.nonSL3-1
GTGAACTTTAGCATTGCTAACAACGAGAATATTGTTTTCCTTGTTAAAAAATTTTAATAA
AAGAAGTAACACGCTGCTAATTGAACTGCCAACATCGCCATAAAATCTCCGGTTCATTGT
TTAGGAATTTCATAAGAAAATTGTATAATGCCTCTGCGCTTGGATATCAAGCGAAAACTT
AACGCAAGATCGGATCGTGTAAAATGTGTTGATTTACATCCTAGTGAACCATGGATGTTG
GTATCACTTTATAATGGCAATGTTCACATATGGAATCATGAAACTCAACTTTTGGTCAAA
TCATTTGAAGTATGTGACCTTCCTGTAAGAGCAACACGATTTGTTCCTCGGAAAAACTGG
GTCATCACTGGATCGGATGACATGCAAATACGCGTTTTCAACTACAACACCCTGGAACGT
TCTCATGCGTTTGAAGCTCACACAGATTACATTCGATCAATTGCTGTCCACCCCACCCAA
CCCTACATATTAACCAGCAGTGATGACATGCTGATTAAACTTTGGGATTGGGACAAGAAA
TGGAGTTGTGCTCAAGTATTTGAGGGCCACACTCACTACGTGATGCAAATTGTCATCAAT
CCCAAGGATAATAATCAATTCGCGAGTGCATCACTTGACTGCAGTATCAAAGTATGGCAA
CTTGGTTCAGCAACTCCAAACTTTACATTAACTGGTCATGATAAAGGTGTCAACTGCGTG
GATTACTACAATGGTGGTGACAAACCTTACCTTATTTCTGGCGCTGACGATCGCTTAACA
AAAATATGGGATTATCAGAACAAGACATGTGTGCAGACATTGGAGGGTCACTCACAGAAC
ATCGTGTGTGTAAGCTTCCACCCTGAACTTCCCATCATCATGACTGGTTCCGAGGATGGT
ACTGTTAAGATTTGGCACGCCAACACATATAGACTGGAAACCACACTTAACTATGGTATG
GAGCGCGTGTGGTGCATCTCTGCTATGAAGGGTTCGAATAACATTGCGCTCGGTTACGAT
GAGGGAAGTATCATGATTAAACTTGGACGGGAAGAACCTGCAATGTCCATGGACAGCAAC
GGGAAAATAATTTGGGCCAAACATTCCGAGATTCAACAAGCAAACTTGAAGGCTATGACT
GAACAAGACTTGAAGGATGGAGAACGTCTCCAGCTTGCAGTGAAAGACATGGGAAGTTGT
GAAGTTTATCCACAAACTTTAAAACACAACGCAAATGGAAGGTTTGTTGTAGTGTGTGGA
GATGGAGAATACATCATCTACACTGCGATGGCTTTGAGAAACAAAGCCTTTGGTTCGGCT
CTTGAGTTTACATGGGCCCAAGATTCATCTGAATATGCAGTGAGGGAAAGTGGAACATCC
GTGAAACTTTTCAAAAACTTTAAGGAACGAAAATCTTTCAAACCAGATTTTGGTGCAGAA
GGAATATATGGAGGCCATCTACTTGGAGTTCGAACATCACAAGGACTTGCATTTTATGAT
TGGGAGAACCTTGAACTTATTAGAAGAATTGAAATCAACCCTAAAAATGTGATTTGGTCG
GATAACGGTGACTTGGTTTGTATTACATCCGATGAATCATTTTACATCCTTAAGTATGAT
CAATCTAAGATTGAAGAATCAAAGGAGAATACCGACCTGGTTACTGAAGATGGGATAACT
GATGCATTCAGCGATGATATTGGAGAAATTGAAGAAGTTGTGAAGACTGGTTTATGGGTT
GGCGATTGTTTCATATACACCAACTCTGTCAACAGATTAAATTATTATGTTGGTGGTGAG
ATCGTCACCATTGCTCATTTGGATCGGGTATTATATCTACTCGGGTATATTCCAAGTGAC
AACCGACTTTACCTCGGTGATAAAGAACTTAATGTGGTGAGTTACTCTCTGCTGCTGTCG
GTGCTTGAATACCAAACTGCGGTGATGCGAGAAGATTTTGAGACTGCTGATAAAGTTCTT
CCTTCTATTCCAAAAGAGCAAAGAACAAGAGTTGCACATTTTCTTGAGAAACAAGGATTT
AAACCGCAAGCGATGGCTGTAACAAGTGACCCAGAACACAAGTTTGAATTGGCTCTTGGT
CTGGGTGATCTCAAGGTAGCTTACCAACTTGCACAGGAGGCACAGGCTGAGCAAAAATGG
AAGCAACTTGCTGAGCTGGCTACACGGAAATGTGAGTTTGGACTTGCACAGGAGTGCTTA
CGTCAAGCAGAAGACTTCGGTGGTTTGCTTTTGCTTGCGACATCAGCTGGTAACGCTGAC
ATGGTTAAGTCGTTGGCAGATGGAGCTAAAGCAGGAGGAAAAAATAATGTGGCTTTCCTA
AGTTACTTTATTACTGGCCAAACTAAGCAGTGTCTCGATCTGCTGATCAACACAAACAGA
CTTCCTGAAGCTGCTTTCTTTGCTCGAACTTATCTTCCAAGTGAAATGAGCAGGGTTGTT
CAATTATGGAAAGAAAATCTTAGTTCAACAAATAAAAAGGCAGCTGATTCACTCGCTGAC
CCAGAAAAATATGAGAACTTGTTTCCAAACTTGGCAGAAAGTTTAGTGGCCGAGAAATTT
CTTAATGCAACTGAGGAGTTGAGACCTGCTTCCCATTACCCTGTCACACCGTCAAATGAT
GACCGCGATGTACTTGAAGAGGCTGCTGGGTTTGAATCAGGAAATGCAGATAAAATGGTT
GAGGAGGAGGACGTTGTTCCGGAGGTTTCTATTCCACTGATAAAGGATGAAGATGACGGA
AATACAGTCAAAGATGAGCCTTGTGCTGGTGAAGAAGAGGAAGATGAGACACCAGATGTG
GAAACACAAGAACAACAGGTGCCACAAGCTCCCTCCAGCCTGGATGAATATGATGACCTT
GAGCTGGACATTGAAAATCTGGAGTTAGACGATGATATAGATACAAGTGGTGTGAATCTT
GATGATGAACTCTTGGATGATTAACCAGATCTCTAGATCTTCATATCATTGACTTATTTA
TCTCGTATAGAAGCGCTTAAGTTTTGCTGCAGAATTTTCATTTAAGTGAAACTTGTTTAC
CGGTGTTCAGAATTAGCAGTTAAATTTGTAGCGTTTCTAATCTTTAATATTGTTGCGCCC
GTATTCTTATAAGAGTTTGGTATAGTTGGGAAACTAGCTGGTATTTTGTACATACATTAT
CTACATTACCATGCCTTATTGTGTAGGATTCAACACAACTTGCAAGCATATTGAATATTG
ATGTGTAGTCAAATAACATTCACAAAAATAGTTTTGTGCAATATCTAACATTTCAGTCAC
ACCTGGTTTATTACTTTGCCAACATTGTTTGGGTTTTTAATTGTAACTTAAAATATGAAT
ATTGACATGGTGCATCGCTCCATTGCAAAAATACAGATATATGTACGACCAATGCTCATT
TA
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[5-301] 3.66E-80 - T[231-313] 1.74E-14 - T[348-498] 1.74E-14 |
| PIRSF |
COPB2 (IPR016453) - T[6-904] 0.0 |
| SMART |
WD40_repeat (IPR001680) - T[8-47] 0.084 - T[50-89] 0.026 - T[92-131] 2.6E-8 - T[135-175] 1.2E-7 - T[178-219] 3.6E-6 - T[222-261] 1.0E-10 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[15-270] 49.672 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[15-304] 3.7E-108 |
| Pfam |
WD40_repeat (IPR001680) - T[20-47] 0.17 - T[64-89] 0.25 - T[96-131] 3.6E-5 - T[136-174] 0.022 - T[181-219] 2.0E-5 - T[224-260] 5.0E-9 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[99-131] 13.55 - T[142-184] 11.31 - T[185-228] 12.046 - T[229-270] 16.19 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[118-132] 7.1E-5 - T[206-220] 7.1E-5 - T[248-262] 7.1E-5 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[323-767] 2.0E-167 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 25.062 % | 246 | 1.0E-67 |
| COPB2_HUMAN | 72.204 % | 1445 | 0 |
| LIS1_HUMAN | 24.815 % | 111 | 4.78E-26 |