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TRANSCRIPT CARD

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  1. EST 'JG381189' > 
  2. Transcript 'KH2012:KH.C1.264.v3....' > 
  3. Transcript 'Haaura.CG.MTP2014.S1...' > 
  4. EST 'FF756382.1' > 
  5. Transcript 'KH2012:KH.L87.47.v2....'

Transcript Model

Transcript Id

KH2012:KH.L87.47.v2.A.SL2-1

Possible name(s)

NXF1; NXF2; NXF2B

Gene model

KH2012:KH.L87.47

Location

KhL87 [126,761 / 128,825]

Sequences

Amino acid sequence

Length: 104

>KH.L87.47.v2.A.SL2-1
SFVCQVTGNALKIINEQFFVRNPTPQEIKDLKATTTKNKIPSAPAATNAPSQDDMIASFS
RESGMNVGYSRQCLEENGWNYEKAGQTFLELNGKGAIPAEAFVK

Nucleotide sequence

Length: 1,194

>KH2012:KH.L87.47.v2.A.SL2-1
AAGTTTTGTTTGTCAAGTTACTGGGAATGCGTTAAAGATAATCAATGAACAATTCTTTGT
TCGAAATCCAACCCCTCAAGAAATCAAAGATTTAAAAGCAACGACAACCAAGAACAAGAT
ACCCAGCGCACCAGCTGCCACCAATGCACCATCTCAAGATGATATGATCGCTTCATTTTC
ACGGGAGTCCGGTATGAATGTCGGATACTCCAGACAGTGTTTGGAAGAGAATGGATGGAA
TTATGAGAAAGCTGGACAAACTTTCCTGGAGTTAAATGGCAAAGGTGCAATTCCTGCTGA
AGCTTTTGTCAAATAGATATCAACACATTGTGCCTTAAGTCAGCATAAATGCACAGAAGA
GTAAATTGGTACATGGAAGACTAAAAACATTTGAAAAAATACTATAATTTTCGAAAATTC
TACGTTATCATGCTTTAAAAAATCTGCAAAAAATTGTTTTTTTCGTTTGTTTTGTAAACT
GTTGTGTTTTAACATGGACTTTTTAACTTTTACTTAAAAGCACAGGAAATTTTGGTGGCA
ACAAAATGCCAGGCGTGTAACAGGTTCAATTTTTCCTGTTCTTTGCTAAAATATTCAGTG
GTTTTAGGGGGAGTTTGTTTTGGGAAACTATCGAGACAACTTTTGCATAAGTTTAAATTG
GAATTTCTGGAAAAATTTATATTGACAACGCCAAAAACTTGTATTACTGCTATATTGAAC
AAGCGACAATTTCTATTTAAACTTTTACCAGCAAATGCTACTTGAAACTTTTCTGTCTCT
TTTGGAATGTATAAAAGAAGAATTCAACCATTTTATTTTCATGAAGAATTTGATGATACA
TTTGTAAAAGACAACTGGATCACTTTCAATCTGTCTTATTGTTTTTATTACTGAAGAAGA
AGAAAAAAACTACTATATTTTGCACAACTAACTCAGAAAAAAAATCGCATTTCAAAAAAA
TACATTCTACAACATGCTGTACAAATGTTTTATTTCATCATAAACCTTTGCATTAGTTGT
CTTACCAAATTAGTAGGTTTAGTTGTTTTACCACTGAATATTTAATGTACCCGTTCCAAA
TTTCAATCGGTTGTAATTTTCTGTAGCGTGATGTAATTTGTGGAGTTTTCATGGCTTTGA
AAGGTCGAGTTTGAATTGGCAATTTATTCAAGATTTTGTGTAGAAAATACAAAA

InterProScan

PANTHER
NXF_fam (IPR030217) - T[2-103] 2.1E-24
SMART
TAP_C_dom (IPR005637) - T[41-104] 2.4E-25
SUPERFAMILY
UBA-like_sf (IPR009060) - T[43-104] 2.04E-19
ProSiteProfiles
TAP_C_dom (IPR005637) - T[50-104] 25.81
CDD
TAP_C_dom (IPR005637) - T[52-102] 9.02888E-24
Pfam
TAP_C_dom (IPR005637) - T[55-102] 6.3E-22

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NXF1_HUMAN 39.394 % 82.8 6.54E-20
NXF2_HUMAN 38.614 % 75.5 2.2E-17