- Transcript 'KH2012:KH.L112.2.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Clone 'ma328c13' >
- Clone 'ma303f22' >
- Transcript 'KH2012:KH.L87.48.v1....'
Transcript Model
Transcript Id
KH2012:KH.L87.48.v1.B.ND1-1
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
KhL87 [273,075 / 282,720]
Amino acid sequence
Length: 810
>KH.L87.48.v1.B.ND1-1
YFWKMGESVKYFMSHWGPFLKIFLAPRSILNNFPHMEDDVRKQITDEGNKIKQVELFIKY
LEECEEPGILQAFLDALRNSQGTGQWIADVLDGKLDHQLGKCEEYMQDVPQIKKLFILIK
KDLNVIDFEDFTSFFSHHLDTEEKEEIQSVFVKGNSAAGTAFFSIIVRKPPSWLKEFLEE
IEGQHYIHKLHGSLAAALREYFFFYGSIKQLKLRNYQLELAEQALQGNNSLIVAPTVDLF
HTPCSRLEVTKFVTLKDCDFINELGLLIYDECHHAMKGDPYNSIMKVYHDNLTKYNGAKP
LPQVIGMTASPGVGGAKSVQAATQHIKRLLANLNVTTAPVEVIENKKELGKHTTETTCEI
RRIDRKKTQFQENMVTLINKIWENLKIEFEKAENEVKDIDTNLKAKPGTQAFEAWCVQLR
ESSSTLRNDKLSQRLQEYAQHLREYNNSLMIDYDLTSTEACDYVTQFWCNACTTVVPELE
QLHEDYAPKREYHTSPILRKLFEILTAEFVDFPESKCIIFVRTRCIAKALVTCLMEDFYD
LKPKQLTGVGASAGDGGMTRVEQEDTISSFRDGSTKIIVATSVAEEGFDIPACNLVIAYN
YSTNEIGHVQRQGRGRAKESKMFLLAYEGSALIHQEETNIAQLECSREALKQIRNTNSTI
LEQEIKEFQRLLKVERESERSAAQRQIEGAIASNKIWTFLCKKCKKVATTSDKFQHINHQ
HHVVVDAGFIERAEIVQYPAIKHKVFGEQTIIGIVKCKSCRSDWGAYMRHRQQPISVLKI
VNFVLQHEEDRITVKQWKKSPFNVHKEFME
Nucleotide sequence
Length: 3,233
>KH2012:KH.L87.48.v1.B.ND1-1
CTGTGTTACCAGCTCTTATTGTTACAATGCAACAGACGAATGTTTTTTTATTAGTGAAAT
AACGATTTAGGAACACTTGCCAGTACCGAAGATCAAATTAATTACAACAACAAAGAGAAG
GGAATTAGCAACAAAACGACCGCCATTACAAACGTTTTGTTTTGTTAATATTTCTGGAAA
ATGGGAGAAAGTGTTAAATACTTTATGTCCCATTGGGGACCTTTTTTAAAAATATTTCTT
GCACCTCGTTCAATACTAAACAACTTCCCTCATATGGAAGATGACGTTCGAAAACAAATC
ACTGACGAAGGAAATAAGATAAAACAAGTCGAATTGTTTATAAAATATTTGGAGGAATGT
GAAGAACCTGGAATTTTGCAAGCATTTCTAGATGCATTGAGAAATAGTCAAGGCACAGGA
CAGTGGATAGCTGATGTGTTGGATGGTAAGCTGGACCATCAACTTGGAAAATGTGAGGAA
TACATGCAAGATGTTCCACAAATAAAAAAGCTTTTTATTTTGATCAAGAAGGATTTAAAT
GTGATAGACTTTGAGGATTTTACTTCTTTTTTCTCACACCATCTGGACACTGAAGAAAAA
GAAGAAATCCAAAGTGTTTTTGTCAAGGGAAACTCAGCAGCAGGAACTGCATTCTTCTCT
ATTATAGTTCGGAAACCTCCTTCATGGTTAAAAGAATTTCTTGAAGAAATAGAGGGACAA
CATTACATTCACAAATTACATGGAAGTCTCGCAGCAGCCCTTAGAGAGTATTTTTTCTTT
TATGGTTCAATTAAACAACTGAAGCTAAGGAATTACCAATTGGAACTTGCTGAGCAGGCA
TTACAAGGAAACAACTCACTTATTGTTGCACCAACTGTTGATCTGTTTCATACACCTTGT
TCCCGCTTAGAAGTTACCAAGTTTGTAACTTTGAAAGATTGTGACTTCATTAATGAGCTT
GGTCTTCTCATATATGATGAATGTCATCATGCAATGAAAGGGGATCCTTACAACTCCATT
ATGAAAGTTTATCACGATAACTTGACAAAGTACAACGGTGCAAAACCTTTACCACAAGTA
ATTGGAATGACTGCTTCTCCTGGAGTCGGTGGTGCAAAATCTGTTCAAGCAGCAACACAG
CATATAAAGAGACTATTGGCAAACTTAAATGTAACAACTGCACCAGTGGAGGTTATTGAG
AACAAAAAGGAGTTGGGAAAACATACAACAGAAACTACATGTGAAATAAGGCGCATTGAT
CGGAAAAAAACACAATTTCAGGAAAACATGGTTACACTCATAAATAAAATATGGGAAAAC
TTGAAAATAGAATTCGAAAAAGCTGAAAATGAAGTAAAAGATATAGACACGAACCTGAAA
GCAAAACCTGGAACACAAGCATTTGAGGCTTGGTGTGTCCAGTTAAGGGAATCAAGCAGT
ACATTAAGAAATGACAAATTAAGTCAACGACTTCAGGAATATGCTCAACACCTACGTGAA
TATAACAACTCATTGATGATTGATTATGATCTAACCAGCACAGAAGCTTGTGATTATGTA
ACTCAGTTTTGGTGTAATGCATGCACCACAGTTGTACCAGAATTAGAACAATTGCATGAA
GATTATGCACCTAAGAGAGAATATCATACCAGCCCCATATTGAGAAAATTGTTTGAAATT
CTCACCGCTGAGTTTGTCGACTTCCCAGAATCTAAGTGTATTATATTTGTACGCACCAGG
TGTATTGCCAAGGCTTTGGTAACTTGTCTTATGGAAGATTTTTATGATTTAAAACCAAAG
CAACTGACTGGAGTGGGAGCTTCTGCTGGAGATGGAGGAATGACCAGGGTTGAACAAGAA
GACACCATTTCATCTTTCAGAGATGGTTCGACCAAAATAATTGTTGCAACTTCAGTTGCA
GAGGAAGGATTTGATATTCCAGCTTGTAACTTGGTGATTGCATACAACTACTCTACCAAT
GAAATTGGTCATGTACAAAGGCAAGGTAGAGGTCGTGCAAAAGAAAGTAAAATGTTCCTT
CTCGCTTATGAAGGCAGTGCACTAATTCATCAGGAAGAAACTAACATAGCTCAACTAGAG
TGTTCTCGTGAAGCACTAAAACAAATCAGAAATACCAATTCAACCATTCTTGAACAAGAA
ATTAAGGAATTTCAAAGACTTTTAAAAGTTGAGAGAGAATCCGAAAGATCAGCAGCTCAA
CGTCAAATTGAGGGCGCAATCGCATCTAACAAGATATGGACATTCTTATGTAAAAAGTGC
AAAAAAGTTGCCACCACTTCTGATAAATTTCAGCATATTAATCATCAGCACCATGTTGTG
GTTGATGCGGGCTTCATAGAGAGAGCAGAGATAGTTCAATATCCAGCTATAAAACATAAA
GTTTTTGGAGAACAAACAATTATTGGAATAGTGAAGTGTAAAAGCTGCAGGTCTGATTGG
GGAGCATATATGAGACACAGACAACAGCCTATCTCTGTTCTTAAGATTGTCAACTTCGTG
TTACAACATGAAGAAGATAGGATTACTGTTAAGCAATGGAAAAAATCTCCTTTCAATGTT
CATAAAGAGTTCATGGAATGAATTACAAGTTCCTGTTTTACATAGTAGTTTTATTTTTAT
AATCGAAATGCTTTGGCAGGGTATTATTTTTTTAAGCCACTTTGGAGCAATTGCCTTTAC
ATTACGTATCTTTAATATCTGTATAATAACATGTACATAACACTTTAACAGAGTATATAT
ATATTTTATGATATGTAATATTAAATTTGTTGTTTTATGATTGTACAATGGTGTGTTGTA
ATACTTCTGCACTTATCCATTAAGCCGATTAGGAGTTGTAAATATAAATATTTATCATCA
TTTCTGTCCCTATGATTCTTCCTTCCAACTAAATGTAAATATGATTTTAACCATAAACGT
GTTTAATCGTTGAGTCGCTTTATCTGTCGTTTTGACGGGATATCCTGTCCTTTAGTTTTA
CAGCAAACGTTACTACTATATAACTTTATCATCACGTTGAAGACAACTAACATATGTCTT
TTTATTTGTTTCTAATTAATAAAGTGGATAAATGAGTAGTACTAATAATGTATTTATTGT
GTATAAATAAATGTAACTTATTTGTCTTCTTGTAGCAGGGACAACTACAGTCCTGTCCTT
ATAACACGGGTGTTTTCGTGCGCACTTACGAGTTAGCACGTATGTAACTGTGT
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[251-329] 8.145 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[261-327] 8.99E-30 - T[497-630] 8.99E-30 |
| CDD |
Helicase_C (IPR001650) - T[492-621] 3.59914E-13 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[497-673] 14.159 |
| Pfam |
Helicase_C (IPR001650) - T[513-617] 1.3E-17 |
| SMART |
Helicase_C (IPR001650) - T[528-618] 9.0E-16 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[683-810] 29.835 |
| Gene3D |
RLR_C_sf (IPR038557) - T[690-810] 2.9E-28 |
| Pfam |
RLR_CTR (IPR021673) - T[698-805] 8.9E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 30.054 % | 229 | 4.53E-65 |
| DDX58_HUMAN | 28.401 % | 211 | 1.93E-57 |
| IFIH1_HUMAN | 30.252 % | 208 | 5.69E-56 |