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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...'
  2. Clone 'ma328c13'
  3. Clone 'ma303f22'
  4. Transcript 'KH2012:KH.L87.48.v1....'

Transcript Model

Transcript Id

KH2012:KH.L87.48.v1.B.ND1-1

Possible name(s)

DDX58; DHX58; IFIH1

Location

KhL87 [273,075 / 282,720]

Sequences

Amino acid sequence

Length: 810

>KH.L87.48.v1.B.ND1-1
YFWKMGESVKYFMSHWGPFLKIFLAPRSILNNFPHMEDDVRKQITDEGNKIKQVELFIKY
LEECEEPGILQAFLDALRNSQGTGQWIADVLDGKLDHQLGKCEEYMQDVPQIKKLFILIK
KDLNVIDFEDFTSFFSHHLDTEEKEEIQSVFVKGNSAAGTAFFSIIVRKPPSWLKEFLEE
IEGQHYIHKLHGSLAAALREYFFFYGSIKQLKLRNYQLELAEQALQGNNSLIVAPTVDLF
HTPCSRLEVTKFVTLKDCDFINELGLLIYDECHHAMKGDPYNSIMKVYHDNLTKYNGAKP
LPQVIGMTASPGVGGAKSVQAATQHIKRLLANLNVTTAPVEVIENKKELGKHTTETTCEI
RRIDRKKTQFQENMVTLINKIWENLKIEFEKAENEVKDIDTNLKAKPGTQAFEAWCVQLR
ESSSTLRNDKLSQRLQEYAQHLREYNNSLMIDYDLTSTEACDYVTQFWCNACTTVVPELE
QLHEDYAPKREYHTSPILRKLFEILTAEFVDFPESKCIIFVRTRCIAKALVTCLMEDFYD
LKPKQLTGVGASAGDGGMTRVEQEDTISSFRDGSTKIIVATSVAEEGFDIPACNLVIAYN
YSTNEIGHVQRQGRGRAKESKMFLLAYEGSALIHQEETNIAQLECSREALKQIRNTNSTI
LEQEIKEFQRLLKVERESERSAAQRQIEGAIASNKIWTFLCKKCKKVATTSDKFQHINHQ
HHVVVDAGFIERAEIVQYPAIKHKVFGEQTIIGIVKCKSCRSDWGAYMRHRQQPISVLKI
VNFVLQHEEDRITVKQWKKSPFNVHKEFME

Nucleotide sequence

Length: 3,233

>KH2012:KH.L87.48.v1.B.ND1-1
CTGTGTTACCAGCTCTTATTGTTACAATGCAACAGACGAATGTTTTTTTATTAGTGAAAT
AACGATTTAGGAACACTTGCCAGTACCGAAGATCAAATTAATTACAACAACAAAGAGAAG
GGAATTAGCAACAAAACGACCGCCATTACAAACGTTTTGTTTTGTTAATATTTCTGGAAA
ATGGGAGAAAGTGTTAAATACTTTATGTCCCATTGGGGACCTTTTTTAAAAATATTTCTT
GCACCTCGTTCAATACTAAACAACTTCCCTCATATGGAAGATGACGTTCGAAAACAAATC
ACTGACGAAGGAAATAAGATAAAACAAGTCGAATTGTTTATAAAATATTTGGAGGAATGT
GAAGAACCTGGAATTTTGCAAGCATTTCTAGATGCATTGAGAAATAGTCAAGGCACAGGA
CAGTGGATAGCTGATGTGTTGGATGGTAAGCTGGACCATCAACTTGGAAAATGTGAGGAA
TACATGCAAGATGTTCCACAAATAAAAAAGCTTTTTATTTTGATCAAGAAGGATTTAAAT
GTGATAGACTTTGAGGATTTTACTTCTTTTTTCTCACACCATCTGGACACTGAAGAAAAA
GAAGAAATCCAAAGTGTTTTTGTCAAGGGAAACTCAGCAGCAGGAACTGCATTCTTCTCT
ATTATAGTTCGGAAACCTCCTTCATGGTTAAAAGAATTTCTTGAAGAAATAGAGGGACAA
CATTACATTCACAAATTACATGGAAGTCTCGCAGCAGCCCTTAGAGAGTATTTTTTCTTT
TATGGTTCAATTAAACAACTGAAGCTAAGGAATTACCAATTGGAACTTGCTGAGCAGGCA
TTACAAGGAAACAACTCACTTATTGTTGCACCAACTGTTGATCTGTTTCATACACCTTGT
TCCCGCTTAGAAGTTACCAAGTTTGTAACTTTGAAAGATTGTGACTTCATTAATGAGCTT
GGTCTTCTCATATATGATGAATGTCATCATGCAATGAAAGGGGATCCTTACAACTCCATT
ATGAAAGTTTATCACGATAACTTGACAAAGTACAACGGTGCAAAACCTTTACCACAAGTA
ATTGGAATGACTGCTTCTCCTGGAGTCGGTGGTGCAAAATCTGTTCAAGCAGCAACACAG
CATATAAAGAGACTATTGGCAAACTTAAATGTAACAACTGCACCAGTGGAGGTTATTGAG
AACAAAAAGGAGTTGGGAAAACATACAACAGAAACTACATGTGAAATAAGGCGCATTGAT
CGGAAAAAAACACAATTTCAGGAAAACATGGTTACACTCATAAATAAAATATGGGAAAAC
TTGAAAATAGAATTCGAAAAAGCTGAAAATGAAGTAAAAGATATAGACACGAACCTGAAA
GCAAAACCTGGAACACAAGCATTTGAGGCTTGGTGTGTCCAGTTAAGGGAATCAAGCAGT
ACATTAAGAAATGACAAATTAAGTCAACGACTTCAGGAATATGCTCAACACCTACGTGAA
TATAACAACTCATTGATGATTGATTATGATCTAACCAGCACAGAAGCTTGTGATTATGTA
ACTCAGTTTTGGTGTAATGCATGCACCACAGTTGTACCAGAATTAGAACAATTGCATGAA
GATTATGCACCTAAGAGAGAATATCATACCAGCCCCATATTGAGAAAATTGTTTGAAATT
CTCACCGCTGAGTTTGTCGACTTCCCAGAATCTAAGTGTATTATATTTGTACGCACCAGG
TGTATTGCCAAGGCTTTGGTAACTTGTCTTATGGAAGATTTTTATGATTTAAAACCAAAG
CAACTGACTGGAGTGGGAGCTTCTGCTGGAGATGGAGGAATGACCAGGGTTGAACAAGAA
GACACCATTTCATCTTTCAGAGATGGTTCGACCAAAATAATTGTTGCAACTTCAGTTGCA
GAGGAAGGATTTGATATTCCAGCTTGTAACTTGGTGATTGCATACAACTACTCTACCAAT
GAAATTGGTCATGTACAAAGGCAAGGTAGAGGTCGTGCAAAAGAAAGTAAAATGTTCCTT
CTCGCTTATGAAGGCAGTGCACTAATTCATCAGGAAGAAACTAACATAGCTCAACTAGAG
TGTTCTCGTGAAGCACTAAAACAAATCAGAAATACCAATTCAACCATTCTTGAACAAGAA
ATTAAGGAATTTCAAAGACTTTTAAAAGTTGAGAGAGAATCCGAAAGATCAGCAGCTCAA
CGTCAAATTGAGGGCGCAATCGCATCTAACAAGATATGGACATTCTTATGTAAAAAGTGC
AAAAAAGTTGCCACCACTTCTGATAAATTTCAGCATATTAATCATCAGCACCATGTTGTG
GTTGATGCGGGCTTCATAGAGAGAGCAGAGATAGTTCAATATCCAGCTATAAAACATAAA
GTTTTTGGAGAACAAACAATTATTGGAATAGTGAAGTGTAAAAGCTGCAGGTCTGATTGG
GGAGCATATATGAGACACAGACAACAGCCTATCTCTGTTCTTAAGATTGTCAACTTCGTG
TTACAACATGAAGAAGATAGGATTACTGTTAAGCAATGGAAAAAATCTCCTTTCAATGTT
CATAAAGAGTTCATGGAATGAATTACAAGTTCCTGTTTTACATAGTAGTTTTATTTTTAT
AATCGAAATGCTTTGGCAGGGTATTATTTTTTTAAGCCACTTTGGAGCAATTGCCTTTAC
ATTACGTATCTTTAATATCTGTATAATAACATGTACATAACACTTTAACAGAGTATATAT
ATATTTTATGATATGTAATATTAAATTTGTTGTTTTATGATTGTACAATGGTGTGTTGTA
ATACTTCTGCACTTATCCATTAAGCCGATTAGGAGTTGTAAATATAAATATTTATCATCA
TTTCTGTCCCTATGATTCTTCCTTCCAACTAAATGTAAATATGATTTTAACCATAAACGT
GTTTAATCGTTGAGTCGCTTTATCTGTCGTTTTGACGGGATATCCTGTCCTTTAGTTTTA
CAGCAAACGTTACTACTATATAACTTTATCATCACGTTGAAGACAACTAACATATGTCTT
TTTATTTGTTTCTAATTAATAAAGTGGATAAATGAGTAGTACTAATAATGTATTTATTGT
GTATAAATAAATGTAACTTATTTGTCTTCTTGTAGCAGGGACAACTACAGTCCTGTCCTT
ATAACACGGGTGTTTTCGTGCGCACTTACGAGTTAGCACGTATGTAACTGTGT

InterProScan

ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[251-329] 8.145
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[261-327] 8.99E-30 - T[497-630] 8.99E-30
CDD
Helicase_C (IPR001650) - T[492-621] 3.59914E-13
ProSiteProfiles
Helicase_C (IPR001650) - T[497-673] 14.159
Pfam
Helicase_C (IPR001650) - T[513-617] 1.3E-17
SMART
Helicase_C (IPR001650) - T[528-618] 9.0E-16
ProSiteProfiles
RLR_CTR (IPR021673) - T[683-810] 29.835
Gene3D
RLR_C_sf (IPR038557) - T[690-810] 2.9E-28
Pfam
RLR_CTR (IPR021673) - T[698-805] 8.9E-23

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DHX58_HUMAN 30.054 % 229 4.53E-65
DDX58_HUMAN 28.401 % 211 1.93E-57
IFIH1_HUMAN 30.252 % 208 5.69E-56