- Transcript 'Cisavi.CG.ENS81.R117...' >
- Transcript 'KH2012:KH.C5.23.v2.A...' >
- Transcript 'KH2012:KH.C4.531.v2....' >
- Transcript 'Moocci.CG.ELv1_2.S65...' >
- Transcript 'KH2012:KH.L95.17.v1....'
Transcript Model
Transcript Id
KH2012:KH.L95.17.v1.A.ND1-1
Possible name(s)
PRDM14; PRDM4; PRDM9
Gene model
Location
KhL95 [14,074 / 20,001]
Amino acid sequence
Length: 623
>KH.L95.17.v1.A.ND1-1
YCQNKSFLNRKMVVEQKITKQEQERIISEFFKSWNGFVSVPVEDIVKKVKFRVSLKNLFK
PEEYAKLCRYEKKRIRKIGRNLTIMMYLGLPLPNENELRAKIGLLPRGSLKQMAISDSDQ
DVDDDDWKPWKRSKKKQGMLSVTDIMKRQQWLAKKCHVKNEEHDDTIVIPEEFKGPDYEK
DSVASGTKKVVKAKTKPELAVDRYPKRDLRLVKYKYPSDYKEDDFLYCDDCDKLYLGDCE
VHGPYKPAPDAVVKKGLIDRARKTSPDGISIAMSGIRAGGLGAWCDKGFSKNTVFGPYEG
KAVHRNDVAKLSRLFEGGYAWEIYKKGKLSHYIDGEDTKQSNWMRYINCACFEEQQNVIA
YQYQGDIYYRLYRDVTPGTELLVWYGDQYAQSLGIPTEYKTKCVQPEKETEAVRKLERKI
CLDQYFECETCGKVFADKPTLLRHDKNKHPVRSSTNKHKCPWCEYSCDIVQLFERHKRTH
TGEKPFKCDTCGKRFSQKCSLKTHIRIHTKERPYPCDRCNKRFGRISNLKTHIRAVHDKI
ASFVCTECGAKFGRGTNLTTHMRTHTGEKPYQCKECSAKFAVLSSLRQHVIIIHTKEYPH
RCAICAKGFLTPGELRKHKEKFH
Nucleotide sequence
Length: 2,206
>KH2012:KH.L95.17.v1.A.ND1-1
TAAATGTGTGTTATTTTTATGAAATTCGTTGTTGTTTTTTTGGCGGGAAAGTTATATTCT
AGAATATTTAAAACAATTTTCCGAAAATTTCGTCAAAAATTAAGTTTTTTTGGAAAAGGT
CAAGAAAAATCAAAGACTAATGAAATAATATTGTCAAAATAAGTCTTTCCTAAATCGGAA
AATGGTTGTGGAACAAAAAATTACAAAGCAAGAACAGGAAAGAATTATTTCAGAGTTTTT
TAAAAGTTGGAATGGTTTTGTCTCGGTACCAGTTGAGGATATCGTTAAAAAAGTGAAATT
TCGAGTTTCGTTGAAAAATTTGTTCAAGCCTGAAGAATACGCAAAATTATGTCGGTACGA
GAAAAAAAGAATTCGGAAAATTGGACGTAATTTAACGATAATGATGTATTTAGGTCTTCC
ACTACCAAATGAAAATGAATTACGAGCAAAAATTGGTCTTCTACCTCGTGGAAGTTTGAA
ACAAATGGCGATATCTGACAGTGACCAAGATGTTGATGATGATGATTGGAAGCCGTGGAA
ACGAAGTAAAAAGAAACAAGGGATGCTGAGTGTAACCGACATCATGAAGAGACAACAATG
GTTGGCAAAGAAATGCCATGTTAAAAATGAAGAGCACGACGATACCATTGTTATACCGGA
GGAATTCAAAGGGCCAGATTATGAAAAAGACTCTGTAGCGAGTGGAACCAAAAAAGTTGT
CAAAGCAAAAACCAAACCAGAGCTTGCTGTGGATAGATACCCAAAGAGAGACTTACGACT
TGTCAAGTATAAATACCCAAGCGATTATAAAGAAGATGATTTTCTATATTGCGACGACTG
CGACAAACTATATCTTGGTGATTGTGAAGTGCATGGACCTTACAAACCAGCTCCAGATGC
TGTTGTTAAAAAAGGTTTGATTGATCGTGCCAGAAAGACATCGCCCGATGGAATAAGCAT
TGCTATGTCAGGTATAAGGGCGGGTGGATTAGGTGCTTGGTGCGACAAGGGTTTCAGTAA
AAACACTGTGTTTGGTCCGTATGAAGGAAAAGCTGTTCATCGAAACGATGTCGCAAAACT
TTCACGACTGTTTGAGGGTGGTTACGCTTGGGAGATTTACAAAAAAGGAAAACTGTCCCA
TTACATTGATGGTGAAGACACCAAGCAAAGTAACTGGATGAGATATATTAATTGTGCATG
TTTTGAAGAACAGCAGAATGTCATTGCGTACCAGTACCAGGGAGACATATACTACAGATT
GTACAGAGACGTCACACCTGGTACTGAGCTATTGGTTTGGTATGGTGACCAGTATGCGCA
AAGTTTGGGAATCCCCACTGAATACAAAACAAAATGTGTTCAACCTGAAAAAGAAACTGA
AGCAGTTCGGAAATTAGAAAGGAAGATTTGTCTCGATCAATATTTTGAATGTGAAACATG
CGGAAAAGTGTTCGCCGACAAACCAACTTTGTTACGTCATGATAAGAACAAACACCCCGT
CCGATCGTCCACGAACAAACACAAGTGTCCATGGTGCGAATATTCGTGTGATATTGTTCA
ACTCTTTGAACGACACAAACGCACTCACACTGGTGAGAAGCCGTTCAAATGCGACACTTG
TGGGAAACGGTTTTCACAAAAGTGCAGCTTAAAGACCCACATCCGAATCCACACCAAGGA
GCGACCTTACCCATGCGATAGATGCAACAAACGGTTTGGCCGTATTAGTAACCTGAAAAC
ACACATCCGAGCCGTCCATGATAAAATCGCGTCGTTCGTGTGCACGGAGTGTGGGGCAAA
GTTTGGGCGTGGGACGAATCTAACCACGCACATGCGAACCCACACCGGTGAAAAACCTTA
TCAATGCAAAGAATGTTCCGCGAAGTTCGCGGTCTTATCGAGTTTACGCCAACACGTCAT
AATAATCCACACAAAGGAATATCCGCACCGATGCGCGATTTGCGCGAAAGGATTCTTGAC
ACCCGGTGAACTACGGAAACATAAAGAGAAATTCCATTAAATATTTTGTAACAGTGCGTA
ATTATGACGTCACTATGTAAATAACAAGGTACATTATGACGTCATAAATACGATGTTTAT
TGTTTTTATTAGAGTTGTTGTTGTTGCCGAGTTCGCCGATGTTTTTGACAAATCGACTTT
TCTTTGTTTTTATTTTTGTTGCAAAATAAAAAAGTTAAAACAGAAA
| ProSiteProfiles |
SET_dom (IPR001214) - T[267-386] 15.02 |
| SMART |
SET_dom (IPR001214) - T[269-392] 1.5E-5 |
| Pfam |
SET_dom (IPR001214) - T[326-386] 3.9E-7 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[426-454] 11.385 - T[458-485] 11.323 - T[486-513] 16.643 - T[514-537] 11.863 - T[543-570] 16.706 - T[571-599] 12.799 - T[600-623] 10.284 |
| SMART |
Znf_C2H2_type (IPR013087) - T[426-449] 0.0044 - T[458-480] 0.13 - T[486-508] 3.6E-4 - T[514-537] 0.0023 - T[543-565] 0.0012 - T[571-594] 0.017 - T[600-623] 0.34 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[428-449] . - T[460-480] . - T[488-508] . - T[545-565] . - T[573-594] . - T[602-623] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[455-489] 2.26E-6 - T[480-532] 2.92E-19 - T[552-609] 1.12E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRDM9_HUMAN | 29.167 % | 211 | 8.63E-59 |
| PRDM4_HUMAN | 27.692 % | 178 | 2.0E-47 |
| PRD14_HUMAN | 30.789 % | 177 | 2.94E-48 |