- Transcript 'KH2012:KH.C14.176.v1...' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S9...' >
- Transcript 'KH2012:KH.C2.209.v2....' >
- Transcript 'KH2012:KH.L95.17.v2....'
Transcript Model
Transcript Id
KH2012:KH.L95.17.v2.A.SL2-1
Possible name(s)
PRDM14; PRDM4; PRDM9
Gene model
Location
KhL95 [14,074 / 19,688]
Amino acid sequence
Length: 618
>KH.L95.17.v2.A.SL2-1
SFLNRKMVVEQKITKQEQERIISEFFKSWNGFVSVPVEDIVKKVKFRVSLKNLFKPEEYA
KLCRYEKKRIRKIGRNLTIMMYLGLPLPNENELRAKIGLLPRGSLKQMAISDSDQDVDDD
DWKPWKRSKKKQGMLSVTDIMKRQQWLAKKCHVKNEEHDDTIVIPEEFKGPDYEKDSVAS
GTKKVVKAKTKPELAVDRYPKRDLRLVKYKYPSDYKEDDFLYCDDCDKLYLGDCEVHGPY
KPAPDAVVKKGLIDRARKTSPDGISIAMSGIRAGGLGAWCDKGFSKNTVFGPYEGKAVHR
NDVAKLSRLFEGGYAWEIYKKGKLSHYIDGEDTKQSNWMRYINCACFEEQQNVIAYQYQG
DIYYRLYRDVTPGTELLVWYGDQYAQSLGIPTEYKTKCVQPEKETEAVRKLERKICLDQY
FECETCGKVFADKPTLLRHDKNKHPVRSSTNKHKCPWCEYSCDIVQLFERHKRTHTGEKP
FKCDTCGKRFSQKCSLKTHIRIHTKERPYPCDRCNKRFGRISNLKTHIRAVHDKIASFVC
TECGAKFGRGTNLTTHMRTHTGEKPYQCKECSAKFAVLSSLRQHVIIIHTKEYPHRCAIC
AKGFLTPGELRKHKEKFH
Nucleotide sequence
Length: 2,044
>KH2012:KH.L95.17.v2.A.SL2-1
GTCTTTCCTAAATCGGAAAATGGTTGTGGAACAAAAAATTACAAAGCAAGAACAGGAAAG
AATTATTTCAGAGTTTTTTAAAAGTTGGAATGGTTTTGTCTCGGTACCAGTTGAGGATAT
CGTTAAAAAAGTGAAATTTCGAGTTTCGTTGAAAAATTTGTTCAAGCCTGAAGAATACGC
AAAATTATGTCGGTACGAGAAAAAAAGAATTCGGAAAATTGGACGTAATTTAACGATAAT
GATGTATTTAGGTCTTCCACTACCAAATGAAAATGAATTACGAGCAAAAATTGGTCTTCT
ACCTCGTGGAAGTTTGAAACAAATGGCGATATCTGACAGTGACCAAGATGTTGATGATGA
TGATTGGAAGCCGTGGAAACGAAGTAAAAAGAAACAAGGGATGCTGAGTGTAACCGACAT
CATGAAGAGACAACAATGGTTGGCAAAGAAATGCCATGTTAAAAATGAAGAGCACGACGA
TACCATTGTTATACCGGAGGAATTCAAAGGGCCAGATTATGAAAAAGACTCTGTAGCGAG
TGGAACCAAAAAAGTTGTCAAAGCAAAAACCAAACCAGAGCTTGCTGTGGATAGATACCC
AAAGAGAGACTTACGACTTGTCAAGTATAAATACCCAAGCGATTATAAAGAAGATGATTT
TCTATATTGCGACGACTGCGACAAACTATATCTTGGTGATTGTGAAGTGCATGGACCTTA
CAAACCAGCTCCAGATGCTGTTGTTAAAAAAGGTTTGATTGATCGTGCCAGAAAGACATC
GCCCGATGGAATAAGCATTGCTATGTCAGGTATAAGGGCGGGTGGATTAGGTGCTTGGTG
CGACAAGGGTTTCAGTAAAAACACTGTGTTTGGTCCGTATGAAGGAAAAGCTGTTCATCG
AAACGATGTCGCAAAACTTTCACGACTGTTTGAGGGTGGTTACGCTTGGGAGATTTACAA
AAAAGGAAAACTGTCCCATTACATTGATGGTGAAGACACCAAGCAAAGTAACTGGATGAG
ATATATTAATTGTGCATGTTTTGAAGAACAGCAGAATGTCATTGCGTACCAGTACCAGGG
AGACATATACTACAGATTGTACAGAGACGTCACACCTGGTACTGAGCTATTGGTTTGGTA
TGGTGACCAGTATGCGCAAAGTTTGGGAATCCCCACTGAATACAAAACAAAATGTGTTCA
ACCTGAAAAAGAAACTGAAGCAGTTCGGAAATTAGAAAGGAAGATTTGTCTCGATCAATA
TTTTGAATGTGAAACATGCGGAAAAGTGTTCGCCGACAAACCAACTTTGTTACGTCATGA
TAAGAACAAACACCCCGTCCGATCGTCCACGAACAAACACAAGTGTCCATGGTGCGAATA
TTCGTGTGATATTGTTCAACTCTTTGAACGACACAAACGCACTCACACTGGTGAGAAGCC
GTTCAAATGCGACACTTGTGGGAAACGGTTTTCACAAAAGTGCAGCTTAAAGACCCACAT
CCGAATCCACACCAAGGAGCGACCTTACCCATGCGATAGATGCAACAAACGGTTTGGCCG
TATTAGTAACCTGAAAACACACATCCGAGCCGTCCATGATAAAATCGCGTCGTTCGTGTG
CACGGAGTGTGGGGCAAAGTTTGGGCGTGGGACGAATCTAACCACGCACATGCGAACCCA
CACCGGTGAAAAACCTTATCAATGCAAAGAATGTTCCGCGAAGTTCGCGGTCTTATCGAG
TTTACGCCAACACGTCATAATAATCCACACAAAGGAATATCCGCACCGATGCGCGATTTG
CGCGAAAGGATTCTTGACACCCGGTGAACTACGGAAACATAAAGAGAAATTCCATTAAAT
ATTTTGTAACAGTGCGTAATTATGACGTCACTATGTAAATAACAAGGTACATTATGACGT
CATAAATACGATGTTTATTGTTTTTATTAGAGTTGTTGTTGTTGCCGAGTTCGCCGATGT
TTTTGACAAATCGACTTTTCTTTGTTTTTATTTTTGTTGCAAAATAAAAAAGTTAAAACA
GAAA
| ProSiteProfiles |
SET_dom (IPR001214) - T[262-381] 15.02 |
| SMART |
SET_dom (IPR001214) - T[264-387] 1.5E-5 |
| Pfam |
SET_dom (IPR001214) - T[321-381] 3.8E-7 |
| SMART |
Znf_C2H2_type (IPR013087) - T[421-444] 0.0044 - T[453-475] 0.13 - T[481-503] 3.6E-4 - T[509-532] 0.0023 - T[538-560] 0.0012 - T[566-589] 0.017 - T[595-618] 0.34 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[421-449] 11.385 - T[453-480] 11.323 - T[481-508] 16.643 - T[509-532] 11.863 - T[538-565] 16.706 - T[566-594] 12.799 - T[595-618] 10.284 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[423-444] . - T[455-475] . - T[483-503] . - T[540-560] . - T[568-589] . - T[597-618] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[450-484] 2.3E-6 - T[475-527] 2.93E-19 - T[547-604] 1.12E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRDM9_HUMAN | 29.167 % | 211 | 1.13E-58 |
| PRDM4_HUMAN | 27.692 % | 178 | 1.46E-47 |
| PRD14_HUMAN | 30.789 % | 177 | 2.57E-48 |