- Molecular Tool 'Musashi>Hox1-TALEN (Yoshida2017)' >
- Region 'REG00000560' >
- Transcript 'Boschl.CG.Botznik201...' >
- Region 'REG00000527' >
- Transcript 'KH2012:KH.L96.87.v1....'
Transcript Model
Transcript Id
KH2012:KH.L96.87.v1.A.SL1-1
Possible name(s)
TBX2; TBX3; TBX4
Gene model
Location
KhL96 [459,803 / 474,848]
Amino acid sequence
Length: 803
>KH.L96.87.v1.A.SL1-1
MCLTDSEDQTRSSSPLEHHFNLPTPMIQDSMKPGPISPLQAVMSAYNHSGMMPSRPGSDL
PFFPPSYLPSLSMAHCAPSLMFPKGANSIAGLGSAFERSLCGAQGHDLPQGKLPDPDDNE
PDDPQVDLDNMELWEQFHRRGTEMVITKTGRRMFPSFKVKVSGLSKTAKYIMLMDIVSAD
DCRYKFHNSRWMVAGKADPELPKRMYIHPDSPATGEQWMNRPGVSFHKLKLTNNIADPHG
HTILNSMHKYQPRFHVVRCGDLAKLPYCAFRTYVFKEMQFIAVTAYQNEKITQLKIDHNP
FAKGFRDSGSGKREKRQHFHLQQQMVGNHKEAASNPTRQTSVYSNSERSECNVSTDDDTR
PNNSGGSTSSVTSPTRLEKRATDYSETIIGESSSKKSRTSITEDDHMSNDEKSKNEVFRR
ETLTSPLKKTPEAASHRRSPHSPIKPRVKDSPVTSSSTLTSPIPIHPGLTGLGGYPNAFM
PHLSGAAAAAYPFLHPSQMSALTAAMSAGGASNPYSHLGSAFNPALLQAVVNAGGMSSLH
RPSAQNPGSQLLAGLGAPSTSQPFSSLFTNSPPLSAFNPYANFFPYGSAAAAAALGFPSP
AAGASSSSLPGGRVDGSSGRPMSPMSLANRLYRQSNHQQHSFNKSFTDPSSPPLHIPGVL
PSSSPRVGTSYSNSAKNSRFSPYAMPFFGFHPFRSGPGTESSENRFDFSHHPRPQPSESS
EPSQRRRSGSGSPISSSSSPAPRVRTISESSDGMKPEPCRRSSNTYPSPTIGTAVQELRN
MENLVSGLDKTRRHSEELRVNKA
Nucleotide sequence
Length: 3,321
>KH2012:KH.L96.87.v1.A.SL1-1
ATTGAAAACGTAAGAACTGTATAGAAAACTTTTGAAAATATAGGTTCGGTTTATAGCATG
TTAAAGTATTGGTGTGGACCTCAGATCTCTGAATGTGTTTGACCGATAGCGAAGACCAAA
CTAGAAGTTCTTCTCCGTTGGAACATCATTTTAATCTTCCAACACCCATGATTCAAGACT
CAATGAAGCCAGGACCCATCTCCCCCCTCCAGGCAGTTATGTCGGCTTATAATCATAGCG
GGATGATGCCTTCTCGTCCTGGGAGCGACCTCCCGTTTTTCCCGCCTTCATATCTTCCTA
GTTTATCAATGGCACATTGCGCTCCTTCGCTTATGTTCCCAAAAGGCGCGAATTCCATAG
CCGGGTTGGGATCGGCGTTTGAGCGCAGTTTGTGCGGGGCTCAGGGCCACGATTTGCCGC
AGGGCAAACTTCCGGACCCCGATGATAACGAACCGGATGACCCGCAGGTCGATCTCGATA
ACATGGAACTGTGGGAGCAATTTCACCGACGTGGAACTGAAATGGTGATCACCAAAACCG
GACGACGAATGTTCCCATCGTTCAAAGTTAAAGTGAGCGGATTGAGCAAAACTGCCAAGT
ACATTATGCTCATGGACATCGTGTCGGCCGACGACTGCCGCTACAAGTTCCACAACTCTA
GATGGATGGTAGCAGGGAAGGCGGACCCCGAGCTCCCCAAAAGGATGTACATCCACCCAG
ACTCCCCGGCAACAGGGGAGCAATGGATGAATCGACCAGGAGTGTCGTTCCATAAGCTCA
AGCTCACCAACAATATCGCGGATCCTCATGGCCATACCATTTTGAACTCAATGCACAAGT
ACCAGCCACGCTTCCACGTTGTGAGGTGTGGGGACCTTGCGAAGCTTCCATACTGTGCGT
TCAGGACGTACGTGTTCAAGGAGATGCAGTTCATCGCAGTGACAGCATACCAGAACGAGA
AGATTACCCAGCTGAAAATCGACCACAACCCCTTCGCAAAGGGATTTCGAGACTCAGGGA
GCGGAAAACGTGAAAAAAGACAACACTTCCACTTGCAACAGCAAATGGTTGGCAACCACA
AGGAGGCAGCAAGCAACCCAACTCGTCAAACAAGTGTGTACTCCAACTCTGAACGATCAG
AGTGCAACGTGTCCACCGATGACGACACACGCCCAAACAACAGTGGCGGAAGTACGTCAT
CCGTGACGTCACCAACCAGGCTCGAGAAGCGAGCCACGGATTACAGTGAGACGATCATTG
GTGAGAGCTCATCAAAAAAATCACGAACCTCAATCACGGAAGACGATCATATGAGCAACG
ATGAAAAATCGAAGAACGAAGTCTTCAGGCGCGAAACCTTAACATCGCCATTAAAGAAAA
CTCCAGAAGCTGCTTCCCACAGAAGATCACCTCATTCCCCCATCAAACCGAGGGTGAAAG
ATTCTCCAGTGACGTCATCGAGTACTCTGACGTCACCCATCCCGATTCACCCTGGGTTAA
CAGGCTTGGGAGGCTACCCAAACGCATTCATGCCCCATTTATCCGGTGCTGCAGCTGCGG
CTTACCCATTCCTACACCCGAGCCAGATGAGTGCTCTCACAGCCGCTATGTCAGCAGGTG
GAGCAAGCAACCCTTACTCTCATCTCGGTTCTGCATTCAACCCAGCCTTACTACAAGCTG
TGGTAAACGCAGGTGGAATGTCATCGCTCCACCGACCCTCCGCTCAGAACCCCGGATCCC
AGCTCCTTGCAGGATTAGGAGCGCCATCCACATCTCAACCTTTCTCATCACTGTTCACCA
ACTCTCCTCCGCTCTCCGCGTTCAATCCATACGCAAACTTCTTCCCGTACGGATCCGCAG
CCGCAGCAGCAGCTCTTGGGTTTCCATCTCCAGCAGCAGGGGCGTCTTCTTCATCTTTAC
CCGGGGGAAGAGTGGACGGGTCCTCCGGAAGACCTATGTCGCCCATGTCCCTCGCTAACC
GGTTGTACCGCCAGTCAAACCACCAGCAACATTCCTTCAACAAAAGCTTCACCGATCCAT
CTTCACCGCCTCTTCACATTCCGGGAGTTCTCCCATCTTCCTCACCGAGGGTGGGCACCA
GTTATTCGAACAGTGCGAAAAATTCTCGGTTCTCCCCATACGCAATGCCCTTCTTCGGCT
TCCATCCTTTCAGATCCGGCCCGGGCACCGAATCCTCGGAAAACCGCTTTGACTTCTCGC
ACCATCCTCGCCCACAGCCATCCGAATCCTCTGAGCCGAGTCAAAGAAGAAGATCCGGTT
CAGGATCACCAATTTCATCCTCTTCATCTCCGGCTCCCCGAGTCCGAACCATATCCGAGT
CCTCGGACGGGATGAAACCAGAGCCATGCCGAAGATCATCGAACACCTACCCGAGTCCTA
CCATTGGCACCGCTGTGCAGGAATTAAGAAACATGGAAAATTTAGTTTCTGGTTTGGACA
AAACAAGACGTCATTCCGAGGAGTTAAGAGTAAACAAAGCATAACACAAACGAGCGGCTG
ATAATGCACAAGGTTTGTTTTGTATCTTGCTACTATTAGCTCCCATAGTTTACCATTCAA
GCTGTTAAGCACAACGCAATACCTCAAAGTGTGCATTTAAACTTTGGGGCGAAAAGTTGT
TCAATAATTTAACTTCAAATAATTTTTCTTACATAATAGAAATCTTTTACAATAACATTA
CACGAATCATTTTAAATTGGATGAGACACAAAAATGTAACTTAAACACAGATTTGTAAAC
TTGGTACACAAAGACTGAATATTTCTGATTCTATGTTATATCCTTTATACCTCATTTTGC
CCCGATTACGTACTGTGTGTAAAACGTACAGTCGTTGCCGCTGAACAACACAGACCCCGA
ACATTGCTATTTCTACAACTTTTTGTTTCAAACCGTAATTCGTGCTCAACGTGCGTGGAT
TCACATGTTCCCCTATATATGTTGTAAGCAGCACATTTTTATATTCCTATCTGAACACGC
TGTAGTAACATCACTATTTTCATATTCTTGTTATTAACGTTTATTCCTGTTGTGATCGTG
GCCGTTATTTATATCTTTCTTGTTGCGAACCTTACTGGATTTTAAGACAAGTTATGTAGA
ATGAATGTGAGGCGATTTAATTGCCTTTTTAAATTTAGGTAGCGATTTAGAAATGTGAAA
ATGTGTTTAGAGATAGTTCGTGCAATTTAAGAGCATTGGGATTATAGATATTTTGCTTTT
AGCTTATTCGTCTTGTGCAGTAAAGGTTTATTTCGCTTTTCTTCCATTACAAAGCAATAC
ATGAAAAATACAAGAAAAAAA
| PANTHER |
TF_T-box (IPR001699) - T[9-86] 6.6E-152 - T[115-796] 6.6E-152 |
| Gene3D |
T-box_sf (IPR036960) - T[121-313] 4.3E-95 |
| SMART |
TF_T-box (IPR001699) - T[123-312] 1.9E-121 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[124-307] 1.19E-76 |
| CDD |
TF_T-box (IPR001699) - T[125-309] 8.08305E-120 |
| Pfam |
TF_T-box (IPR001699) - T[126-307] 1.1E-82 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[128-307] 72.936 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[133-152] . |
| PRINTS |
TF_T-box (IPR001699) - T[141-165] 1.7E-38 - T[206-219] 1.7E-38 - T[243-257] 1.7E-38 - T[278-291] 1.7E-38 - T[299-307] 1.7E-38 |
| PRINTS |
TF_Brachyury (IPR002070) - T[186-206] 1.6E-5 - T[248-265] 1.6E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX2_HUMAN | 77.295 % | 361 | 1.45E-113 |
| TBX3_HUMAN | 54.969 % | 343 | 8.78E-107 |
| TBX4_HUMAN | 62.434 % | 252 | 1.64E-74 |