- Transcript 'KH2012:KH.C12.156.v2...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.S1136.6.v2...'
Transcript Model
Transcript Id
KH2012:KH.S1136.6.v2.B.nonSL4-1
Possible name(s)
DDX27; DDX47; DDX49
Gene model
Location
KhS1136 [2,371 / 4,132]
Amino acid sequence
Length: 453
>KH.S1136.6.v2.B.nonSL4-1
SCYVMAEISTSSDDVTKASTEAVVTFQSLGVVDVLCETCDKLGWKKPSKIQEEAIPVALQ
GNDVIGLAETGSGKTGAFCIPVLQALLENPQRLFALVLTPTRELAFQIEEQFKALGSAIG
IKTCVVVGGVDMMGQQIILAKKPHVVVATPGRLVDHLEKTKGFTLRSIKFLVLDEADRIL
NMDFESELDTILKVIPRERRTFLFSATMTGKVKKLQRAALTKPVKCAVNNKYHTVDKLFQ
YYLFLPSKDKDCYLAAVVNELAGNAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQA
KRLGALNKFKSATKSILVATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRF
GKSVTFVTQYDVELYQRIEELIGKKLPEYEMEHNEVKVLQERVAEAQRLARLEMKERGSK
KRGAVASDSEELADQNIGKHKIYAKKGKKMKRK
Nucleotide sequence
Length: 1,528
>KH2012:KH.S1136.6.v2.B.nonSL4-1
ATAGTTGTTACGTCATGGCTGAGATTAGTACATCATCGGATGACGTAACAAAGGCATCAA
CAGAAGCTGTTGTGACGTTCCAATCCTTAGGCGTCGTCGATGTTTTGTGCGAAACATGCG
ACAAACTGGGATGGAAGAAGCCATCGAAGATACAAGAAGAGGCGATACCTGTTGCGTTAC
AGGGAAACGATGTGATCGGGCTGGCGGAGACCGGATCTGGGAAAACGGGAGCTTTTTGCA
TTCCTGTGTTACAAGCTTTGTTGGAGAATCCACAGCGGCTGTTTGCATTGGTGTTGACGC
CTACAAGGGAATTGGCGTTTCAAATTGAGGAACAATTTAAAGCATTGGGTTCGGCAATTG
GTATCAAAACATGCGTTGTAGTTGGGGGAGTTGACATGATGGGTCAACAAATTATATTGG
CAAAGAAACCTCATGTGGTCGTGGCAACCCCTGGTAGGCTTGTTGACCATCTTGAAAAGA
CGAAAGGCTTCACGTTGCGTTCGATCAAGTTTCTAGTGTTAGATGAAGCTGACAGGATTC
TTAATATGGACTTTGAAAGCGAACTTGACACAATACTAAAAGTTATCCCGCGCGAACGAA
GAACTTTCTTGTTTTCTGCCACGATGACGGGGAAAGTGAAAAAGTTGCAACGAGCTGCAT
TGACCAAACCTGTGAAATGTGCAGTGAATAACAAATATCACACCGTGGATAAACTGTTCC
AATATTATCTGTTCCTTCCATCCAAGGATAAAGATTGTTATCTTGCAGCTGTCGTGAATG
AACTGGCGGGCAACGCGATGATCATATTCTGTGGTACATGCGCAAACACACAACGCACAG
CGCTAATATTGCGCAATCTCGGAATATCCGCCGTGCCACTCCATGGGCAAATGTCGCAAG
CCAAGAGGTTGGGGGCTTTGAATAAATTTAAGAGCGCGACAAAGTCCATCCTCGTGGCGA
CCGATGTTGCGAGCAGGGGGCTTGACATCCCTCATGTGGACGTTGTCATCAACATGGACG
TACCCGCTCGTTCTAAAGACTACATACATCGGGTTGGACGAACCGCTCGTGCGGGAAGGT
TCGGGAAGTCCGTCACATTTGTAACGCAATATGATGTTGAATTGTATCAGAGAATCGAGG
AATTGATCGGGAAGAAACTCCCGGAGTACGAGATGGAGCATAATGAGGTGAAAGTTTTAC
AAGAGCGAGTTGCTGAAGCGCAACGATTGGCGAGGTTGGAGATGAAGGAGCGGGGATCAA
AGAAGAGGGGAGCGGTTGCGAGTGACTCTGAGGAGCTTGCGGATCAAAACATCGGGAAAC
ATAAAATTTACGCAAAGAAAGGAAAAAAGATGAAGAGAAAATAAATTGTTGCAGAATAAA
ACGTTTTATTTTCAAAACTTGATTTAGGAGGAAAATAAAATTGAGTCATGTGAGGTTGTT
GTATAGTTCATATTGTTGAGCTGTGTCTGGATCCACAGTGCAATGGGCCATGAATAACAG
GTTCTGGATCTTATTTTTAATAACCCGT
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[24-52] 8.962 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[43-241] 2.3E-57 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[49-215] 1.8E-49 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[55-226] 32.113 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[93-379] 1.11E-70 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[172-180] . |
| CDD |
Helicase_C (IPR001650) - T[237-366] 1.01661E-36 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[237-397] 22.385 |
| Pfam |
Helicase_C (IPR001650) - T[253-358] 3.8E-29 |
| SMART |
Helicase_C (IPR001650) - T[277-358] 1.9E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 40.443 % | 275 | 2.29E-84 |
| DDX47_HUMAN | 68.68 % | 647 | 0 |
| DDX49_HUMAN | 50 % | 378 | 9.34E-128 |