Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 550

>KH.S1300.1.v1.A.nonSL1-1
NLCLYFQQQPPIILLKEGTDSSQGIPQLVSNINACQVISEAIRTTLGPRGMDKLIVDGRG
KATISNDGATILKLLDVVHPAAKTLVDISKSQDSEVGDGTTTVTLLAAELLKQAKCFVEE
GVHPQLIIRAYRQATNLAIEKIKEIQVQIKTDDPKEQRGLLEKCASTALNSKLIASYKDL
FAPMVVDAVTLLDDLLPLKMIGIKKISGGALEDSKLVSGVAFKKTFSYAGFEMQRKKYKN
PKIALLNVELELKSEKENAEVRVNNVEDYQDIVDAEWQILYDKMKHICDSGAVVVLSKLP
IGDVATQYFADRDMFCAGRVNEEDLKRTMKACGGSIQTSVQHLTDDVLGTCEEFEEEQVG
GERFNFFRGCPQAKTCTILLRGGAEQFMEESERSLHDAIMIVRRAIKNDAVVAGGGAIEM
EISKHLRDHARTIRGKQQLIISAYGKALEVIARQLCENAGFDATNILNKLRQVHAKEDGK
WYGVDINNEDITDNFAACVWEPSIVKKNALTAASEAACLILSVDETVKNPRSGQGDQAGP
PPGRGRGRPR

Nucleotide sequence

Length: 1,885

>KH2012:KH.S1300.1.v1.A.nonSL1-1
AGCACCCTGTTTTGTATTGGAAAATTCTTACTATTATGTTTTAACACATTTTATGAAATC
TGCTACAAAATTTTGAAATCTCTGTTTATACTTTCAGCAGCAACCACCTATTATTCTGCT
AAAGGAAGGGACTGACAGTTCCCAAGGTATTCCCCAACTTGTAAGTAATATCAATGCTTG
TCAAGTTATATCAGAAGCCATTCGTACAACACTTGGTCCAAGAGGAATGGATAAACTTAT
TGTTGATGGTAGAGGCAAAGCTACAATTTCAAATGATGGTGCTACTATATTGAAACTGTT
AGATGTTGTCCACCCAGCAGCAAAAACTTTAGTTGATATTTCTAAATCACAAGATTCTGA
AGTTGGAGATGGTACAACTACTGTTACACTCCTTGCAGCAGAATTGCTTAAACAAGCTAA
GTGCTTTGTTGAAGAGGGTGTCCATCCCCAGCTCATCATTAGGGCCTACCGTCAAGCTAC
CAACCTTGCTATTGAAAAGATCAAAGAAATTCAAGTTCAGATTAAAACTGATGACCCAAA
AGAACAGCGTGGCTTACTAGAGAAATGTGCGTCTACTGCACTCAACTCAAAATTAATTGC
AAGTTACAAAGACCTCTTTGCTCCCATGGTAGTGGATGCGGTGACACTCCTTGATGATCT
GCTTCCTCTAAAGATGATTGGGATCAAGAAGATTTCAGGAGGAGCACTGGAGGATTCCAA
GCTGGTTTCAGGTGTTGCTTTCAAGAAAACTTTCTCATATGCTGGCTTCGAGATGCAAAG
GAAGAAATATAAGAATCCTAAGATTGCTTTGTTGAATGTTGAACTTGAGTTAAAATCGGA
GAAAGAAAACGCTGAAGTCCGAGTCAACAATGTTGAGGACTACCAAGACATAGTTGATGC
TGAATGGCAGATCCTTTATGACAAGATGAAACATATATGTGATAGTGGTGCAGTTGTTGT
CCTGAGCAAGTTACCGATAGGAGACGTAGCAACTCAATATTTTGCCGACCGTGACATGTT
TTGTGCTGGTCGTGTCAATGAAGAAGATCTTAAACGAACTATGAAGGCATGTGGAGGAAG
CATTCAGACAAGTGTTCAACATCTCACTGATGATGTGCTTGGGACTTGTGAGGAGTTTGA
GGAAGAACAAGTTGGTGGTGAAAGATTCAACTTCTTCCGAGGATGTCCACAAGCGAAGAC
TTGCACCATCCTCCTGAGAGGAGGAGCTGAGCAATTCATGGAAGAATCTGAACGATCATT
GCATGATGCTATTATGATTGTTAGACGAGCTATCAAGAATGATGCAGTAGTTGCTGGTGG
TGGAGCCATTGAGATGGAAATCAGCAAACACCTTCGTGACCATGCGCGTACTATCCGTGG
AAAACAACAACTTATTATATCTGCTTATGGGAAGGCACTTGAGGTTATTGCAAGACAGCT
GTGTGAGAATGCTGGCTTCGACGCAACTAATATTCTGAATAAATTGAGACAAGTTCACGC
TAAAGAGGATGGAAAATGGTATGGAGTTGACATCAACAATGAAGATATCACCGATAACTT
TGCAGCTTGTGTGTGGGAACCTTCCATAGTTAAGAAAAATGCACTGACTGCTGCATCTGA
AGCTGCTTGTCTCATTTTGTCTGTGGATGAAACTGTTAAGAACCCAAGATCTGGCCAAGG
GGACCAAGCGGGACCACCACCGGGCCGTGGTAGAGGTCGTCCTCGCTAATTTATTTTTCG
CCATTGGGTAAAAGTGAAATTGCATGGTTTCCAACCCACCAGCAATGTTGTGTGCATGAC
GGTTACTTCACGGCAAATTGTTCCAAACGTTAAATGTAGCACGAATATTATACAGTTTTG
AGTGAAATAAACGTATCTTTTCGTA

InterProScan

TIGRFAM	Chap_CCT_eta (IPR012720) - T[9-532] 4.4E-270
CDD	Chap_CCT_eta (IPR012720) - T[11-532] 0.0
PANTHER	Cpn60/TCP-1 (IPR002423) - T[17-533] 1.7E-215
PANTHER	Chap_CCT_eta (IPR012720) - T[17-533] 1.7E-215
SUPERFAMILY	GROEL-like_equatorial_sf (IPR027413) - T[22-149] 1.31E-87 - T[409-529] 1.31E-87
Gene3D	GROEL-like_equatorial_sf (IPR027413) - T[31-149] 1.0E-186 - T[410-527] 1.0E-186
Pfam	Cpn60/TCP-1 (IPR002423) - T[38-529] 1.9E-161
PRINTS	Chaperone_TCP-1 (IPR017998) - T[40-56] 4.1E-32 - T[62-80] 4.1E-32 - T[92-111] 4.1E-32 - T[377-399] 4.1E-32 - T[411-423] 4.1E-32
ProSitePatterns	Chaperonin_TCP-1_CS (IPR002194) - T[43-55] . - T[64-80] . - T[92-100] .
Gene3D	TCP-1-like_intermed_sf (IPR027410) - T[150-218] 1.0E-186 - T[374-409] 1.0E-186
SUPERFAMILY	TCP-1-like_intermed_sf (IPR027410) - T[157-217] 1.71E-26 - T[372-408] 1.71E-26
SUPERFAMILY	GroEL-like_apical_dom_sf (IPR027409) - T[213-382] 2.88E-49
Gene3D	GroEL-like_apical_dom_sf (IPR027409) - T[219-373] 1.0E-186