- Transcript 'Cisavi.CG.ENS81.R113...' >
- Transcript 'KH2012:KH.S1404.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1404.1.v1.A.nonSL5-1
Possible name(s)
TBX19; TBX6; TBXT
Gene model
Location
KhS1404 [6,253 / 8,022]
Amino acid sequence
Length: 453
>KH.S1404.1.v1.A.nonSL5-1
RMFSKLSASYKPIMTSSDSKLAGMTSSESIETCAVKMALIEHGLWSRFHAFVNEMIVTKN
GRRMFPVLKTSITGLDPTAMYSVMLDFVPVDNNRWKYVNGEWIPGGKPEPHVSSCAYIHP
DSPNFGSHWMKQPVGFSRVKLTNKATGNPQQIMLNSLHKYEPRIHIMRVGGAESQQVVAS
HSFQETRFIAVTAYQNEDVTSLKIKYNPFAKAFLDAKESRSGSENYFKDSTKAGSSQNYS
RANTWTANQSNPTFNQCQYESGIPPFHYPIPNQPKTTRERRMSRTQRSHPYKPSTTQIYQ
DFQPTNYPALPNDQWQSSIEGHELDEGHFSLEPVSVDDVTALGFDTPHQGFATNDLLSIE
PSYSLDYPQFTTTWSYPTNHMPGYVSNSPIRSLEQPEYFYRGYDVSQQNYVTMTSADVSN
VTSSLYETPSPGVMQRPQEDFSIAYTPLTPPSL
Nucleotide sequence
Length: 1,427
>KH2012:KH.S1404.1.v1.A.nonSL5-1
AGAATGTTTTCGAAGCTCAGTGCGAGTTACAAACCTATAATGACGTCATCAGATAGTAAG
TTAGCAGGTATGACGTCATCAGAATCAATTGAAACATGTGCAGTAAAGATGGCGCTAATA
GAGCATGGTTTATGGTCGAGGTTTCACGCGTTTGTCAACGAGATGATTGTGACAAAAAAT
GGACGACGAATGTTTCCGGTTCTTAAAACATCGATTACGGGACTTGATCCAACTGCGATG
TATTCCGTCATGCTTGACTTTGTACCCGTGGATAACAATAGATGGAAATATGTGAACGGT
GAGTGGATCCCCGGGGGAAAACCCGAACCCCATGTTTCGTCATGTGCTTATATTCACCCC
GATTCACCCAACTTTGGTTCGCACTGGATGAAACAACCCGTTGGTTTCAGTCGCGTCAAA
CTTACTAATAAAGCTACAGGGAACCCCCAGCAAATAATGTTGAACTCTCTGCATAAATAC
GAACCCAGGATCCACATCATGCGCGTTGGGGGCGCTGAATCGCAACAAGTCGTTGCCTCG
CATTCATTTCAGGAGACAAGGTTCATTGCTGTTACTGCTTACCAAAACGAAGATGTTACT
TCGCTCAAGATAAAATATAATCCTTTCGCCAAAGCTTTCCTCGACGCAAAGGAGAGCCGC
TCAGGGAGTGAAAATTATTTTAAAGATTCAACGAAAGCGGGTTCGTCGCAAAATTATTCG
AGAGCGAACACATGGACGGCAAATCAAAGCAACCCAACATTCAATCAATGTCAGTATGAA
TCAGGGATTCCCCCATTCCATTACCCCATCCCAAACCAACCGAAAACAACAAGAGAGCGG
CGCATGAGCCGCACACAAAGAAGCCATCCCTACAAACCATCCACAACGCAAATTTATCAA
GATTTCCAACCAACCAATTACCCCGCCCTACCAAACGACCAATGGCAATCAAGTATCGAA
GGTCATGAACTCGATGAGGGACACTTTAGTCTCGAACCAGTCTCTGTAGATGACGTCACC
GCCTTAGGATTCGACACCCCGCATCAGGGTTTTGCAACAAACGATCTTCTTTCAATAGAG
CCTTCCTATTCGTTAGATTATCCTCAATTCACGACCACGTGGTCCTACCCGACCAATCAC
ATGCCAGGATATGTTTCAAACAGTCCAATCAGAAGCCTGGAACAACCGGAGTACTTTTAT
AGAGGCTATGACGTATCACAGCAAAATTACGTCACGATGACGTCAGCAGATGTTAGTAAT
GTGACGTCATCATTATACGAAACTCCGTCACCGGGGGTCATGCAAAGGCCACAAGAAGAT
TTTTCAATCGCGTATACGCCGCTTACGCCACCTTCTTTGTGACGTCACAATGCGAATATA
ATTATCGATTGTTTCGTGAAATAACATTAAAATATGAACACATGTTG
| PANTHER |
TF_T-box (IPR001699) - T[18-452] 1.1E-168 |
| Gene3D |
T-box_sf (IPR036960) - T[34-220] 7.9E-78 |
| SMART |
TF_T-box (IPR001699) - T[34-220] 1.1E-109 |
| CDD |
TF_T-box (IPR001699) - T[35-219] 8.57666E-107 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[35-215] 4.6E-73 |
| Pfam |
TF_T-box (IPR001699) - T[39-215] 2.7E-70 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[39-215] 71.443 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[44-63] . - T[118-136] . |
| PRINTS |
TF_T-box (IPR001699) - T[52-76] 3.7E-42 - T[117-130] 3.7E-42 - T[134-143] 3.7E-42 - T[153-167] 3.7E-42 - T[186-199] 3.7E-42 - T[207-215] 3.7E-42 |
| PRINTS |
TF_Brachyury (IPR002070) - T[97-117] 1.3E-20 - T[158-175] 1.3E-20 - T[211-221] 1.3E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 68.447 % | 294 | 1.25E-95 |
| TBX19_HUMAN | 55.39 % | 282 | 1.1E-90 |
| TBX6_HUMAN | 50 % | 193 | 1.12E-56 |