- Transcript 'KH2012:KH.L20.1.v1.A...' >
- Region 'REG00000300' >
- Transcript 'KH2012:KH.S1404.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1404.1.v1.R.nonSL1-1
Possible name(s)
TBX19; TBX6; TBXT
Gene model
Location
KhS1404 [6,231 / 8,022]
Amino acid sequence
Length: 456
>KH.S1404.1.v1.R.nonSL1-1
FGGRMFSKLSASYKPIMTSSDSKLAGMTSSESIETCAVKMALIEHGLWSRFHAFVNEMIV
TKNGRRMFPVLKTSITGLDPTAMYSVMLDFVPVDNNRWKYVNGEWIPGGKPEPHVSSCAY
IHPDSPNFGSHWMKQPVGFSRVKLTNKATGNPQQIMLNSLHKYEPRIHIMRVGGAESQQV
VASHSFQETRFIAVTAYQNEDVTSLKIKYNPFAKAFLDAKESRSGSENYFKDSTKAGSSQ
NYSRANTWTANQSNPTFNQCQYESGIPPFHYPIPNQPKTTRERRMSRTQRSHPYKPSTTQ
IYQDFQPTNYPALPNDQWQSSIEGHELDEGHFSLEPVSVDDVTALGFDTPHQGFATNDLL
SIEPSYSLDYPQFTTTWSYPTNHMPGYVSNSPIRSLEQPEYFYRGYDVSQQNYVTMTSAD
VSNVTSSLYETPSPGVMQRPQEDFSIAYTPLTPPSL
Nucleotide sequence
Length: 1,449
>KH2012:KH.S1404.1.v1.R.nonSL1-1
CACCCGAGTGTGATTTGGAGGCAGAATGTTTTCGAAGCTCAGTGCGAGTTACAAACCTAT
AATGACGTCATCAGATAGTAAGTTAGCAGGTATGACGTCATCAGAATCAATTGAAACATG
TGCAGTAAAGATGGCGCTAATAGAGCATGGTTTATGGTCGAGGTTTCACGCGTTTGTCAA
CGAGATGATTGTGACAAAAAATGGACGACGAATGTTTCCGGTTCTTAAAACATCGATTAC
GGGACTTGATCCAACTGCGATGTATTCCGTCATGCTTGACTTTGTACCCGTGGATAACAA
TAGATGGAAATATGTGAACGGTGAGTGGATCCCCGGGGGAAAACCCGAACCCCATGTTTC
GTCATGTGCTTATATTCACCCCGATTCACCCAACTTTGGTTCGCACTGGATGAAACAACC
CGTTGGTTTCAGTCGCGTCAAACTTACTAATAAAGCTACAGGGAACCCCCAGCAAATAAT
GTTGAACTCTCTGCATAAATACGAACCCAGGATCCACATCATGCGCGTTGGGGGCGCTGA
ATCGCAACAAGTCGTTGCCTCGCATTCATTTCAGGAGACAAGGTTCATTGCTGTTACTGC
TTACCAAAACGAAGATGTTACTTCGCTCAAGATAAAATATAATCCTTTCGCCAAAGCTTT
CCTCGACGCAAAGGAGAGCCGCTCAGGGAGTGAAAATTATTTTAAAGATTCAACGAAAGC
GGGTTCGTCGCAAAATTATTCGAGAGCGAACACATGGACGGCAAATCAAAGCAACCCAAC
ATTCAATCAATGTCAGTATGAATCAGGGATTCCCCCATTCCATTACCCCATCCCAAACCA
ACCGAAAACAACAAGAGAGCGGCGCATGAGCCGCACACAAAGAAGCCATCCCTACAAACC
ATCCACAACGCAAATTTATCAAGATTTCCAACCAACCAATTACCCCGCCCTACCAAACGA
CCAATGGCAATCAAGTATCGAAGGTCATGAACTCGATGAGGGACACTTTAGTCTCGAACC
AGTCTCTGTAGATGACGTCACCGCCTTAGGATTCGACACCCCGCATCAGGGTTTTGCAAC
AAACGATCTTCTTTCAATAGAGCCTTCCTATTCGTTAGATTATCCTCAATTCACGACCAC
GTGGTCCTACCCGACCAATCACATGCCAGGATATGTTTCAAACAGTCCAATCAGAAGCCT
GGAACAACCGGAGTACTTTTATAGAGGCTATGACGTATCACAGCAAAATTACGTCACGAT
GACGTCAGCAGATGTTAGTAATGTGACGTCATCATTATACGAAACTCCGTCACCGGGGGT
CATGCAAAGGCCACAAGAAGATTTTTCAATCGCGTATACGCCGCTTACGCCACCTTCTTT
GTGACGTCACAATGCGAATATAATTATCGATTGTTTCGTGAAATAACATTAAAATATGAA
CACATGTTG
| PANTHER |
TF_T-box (IPR001699) - T[21-455] 1.1E-168 |
| SMART |
TF_T-box (IPR001699) - T[37-223] 1.1E-109 |
| Gene3D |
T-box_sf (IPR036960) - T[37-223] 8.0E-78 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[38-218] 4.72E-73 |
| CDD |
TF_T-box (IPR001699) - T[38-222] 7.04392E-107 |
| Pfam |
TF_T-box (IPR001699) - T[42-218] 2.7E-70 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[42-218] 71.443 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[47-66] . - T[121-139] . |
| PRINTS |
TF_T-box (IPR001699) - T[55-79] 3.8E-42 - T[120-133] 3.8E-42 - T[137-146] 3.8E-42 - T[156-170] 3.8E-42 - T[189-202] 3.8E-42 - T[210-218] 3.8E-42 |
| PRINTS |
TF_Brachyury (IPR002070) - T[100-120] 1.3E-20 - T[161-178] 1.3E-20 - T[214-224] 1.3E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 68.447 % | 294 | 1.82E-95 |
| TBX19_HUMAN | 55.39 % | 282 | 1.43E-90 |
| TBX6_HUMAN | 50 % | 193 | 1.3E-56 |