- Transcript 'KH2012:KH.C4.17.v1.A...' >
- Region 'REG00000042' >
- Transcript 'KH2012:KH.S1404.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1404.1.v1.R.nonSL3-1
Possible name(s)
TBX19; TBX6; TBXT
Gene model
Location
KhS1404 [6,249 / 8,022]
Amino acid sequence
Length: 454
>KH.S1404.1.v1.R.nonSL3-1
GRMFSKLSASYKPIMTSSDSKLAGMTSSESIETCAVKMALIEHGLWSRFHAFVNEMIVTK
NGRRMFPVLKTSITGLDPTAMYSVMLDFVPVDNNRWKYVNGEWIPGGKPEPHVSSCAYIH
PDSPNFGSHWMKQPVGFSRVKLTNKATGNPQQIMLNSLHKYEPRIHIMRVGGAESQQVVA
SHSFQETRFIAVTAYQNEDVTSLKIKYNPFAKAFLDAKESRSGSENYFKDSTKAGSSQNY
SRANTWTANQSNPTFNQCQYESGIPPFHYPIPNQPKTTRERRMSRTQRSHPYKPSTTQIY
QDFQPTNYPALPNDQWQSSIEGHELDEGHFSLEPVSVDDVTALGFDTPHQGFATNDLLSI
EPSYSLDYPQFTTTWSYPTNHMPGYVSNSPIRSLEQPEYFYRGYDVSQQNYVTMTSADVS
NVTSSLYETPSPGVMQRPQEDFSIAYTPLTPPSL
Nucleotide sequence
Length: 1,431
>KH2012:KH.S1404.1.v1.R.nonSL3-1
AGGCAGAATGTTTTCGAAGCTCAGTGCGAGTTACAAACCTATAATGACGTCATCAGATAG
TAAGTTAGCAGGTATGACGTCATCAGAATCAATTGAAACATGTGCAGTAAAGATGGCGCT
AATAGAGCATGGTTTATGGTCGAGGTTTCACGCGTTTGTCAACGAGATGATTGTGACAAA
AAATGGACGACGAATGTTTCCGGTTCTTAAAACATCGATTACGGGACTTGATCCAACTGC
GATGTATTCCGTCATGCTTGACTTTGTACCCGTGGATAACAATAGATGGAAATATGTGAA
CGGTGAGTGGATCCCCGGGGGAAAACCCGAACCCCATGTTTCGTCATGTGCTTATATTCA
CCCCGATTCACCCAACTTTGGTTCGCACTGGATGAAACAACCCGTTGGTTTCAGTCGCGT
CAAACTTACTAATAAAGCTACAGGGAACCCCCAGCAAATAATGTTGAACTCTCTGCATAA
ATACGAACCCAGGATCCACATCATGCGCGTTGGGGGCGCTGAATCGCAACAAGTCGTTGC
CTCGCATTCATTTCAGGAGACAAGGTTCATTGCTGTTACTGCTTACCAAAACGAAGATGT
TACTTCGCTCAAGATAAAATATAATCCTTTCGCCAAAGCTTTCCTCGACGCAAAGGAGAG
CCGCTCAGGGAGTGAAAATTATTTTAAAGATTCAACGAAAGCGGGTTCGTCGCAAAATTA
TTCGAGAGCGAACACATGGACGGCAAATCAAAGCAACCCAACATTCAATCAATGTCAGTA
TGAATCAGGGATTCCCCCATTCCATTACCCCATCCCAAACCAACCGAAAACAACAAGAGA
GCGGCGCATGAGCCGCACACAAAGAAGCCATCCCTACAAACCATCCACAACGCAAATTTA
TCAAGATTTCCAACCAACCAATTACCCCGCCCTACCAAACGACCAATGGCAATCAAGTAT
CGAAGGTCATGAACTCGATGAGGGACACTTTAGTCTCGAACCAGTCTCTGTAGATGACGT
CACCGCCTTAGGATTCGACACCCCGCATCAGGGTTTTGCAACAAACGATCTTCTTTCAAT
AGAGCCTTCCTATTCGTTAGATTATCCTCAATTCACGACCACGTGGTCCTACCCGACCAA
TCACATGCCAGGATATGTTTCAAACAGTCCAATCAGAAGCCTGGAACAACCGGAGTACTT
TTATAGAGGCTATGACGTATCACAGCAAAATTACGTCACGATGACGTCAGCAGATGTTAG
TAATGTGACGTCATCATTATACGAAACTCCGTCACCGGGGGTCATGCAAAGGCCACAAGA
AGATTTTTCAATCGCGTATACGCCGCTTACGCCACCTTCTTTGTGACGTCACAATGCGAA
TATAATTATCGATTGTTTCGTGAAATAACATTAAAATATGAACACATGTTG
| PANTHER |
TF_T-box (IPR001699) - T[19-453] 1.1E-168 |
| SMART |
TF_T-box (IPR001699) - T[35-221] 1.1E-109 |
| Gene3D |
T-box_sf (IPR036960) - T[35-221] 7.9E-78 |
| CDD |
TF_T-box (IPR001699) - T[36-220] 7.04918E-107 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[36-216] 4.6E-73 |
| Pfam |
TF_T-box (IPR001699) - T[40-216] 2.7E-70 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[40-216] 71.443 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[45-64] . - T[119-137] . |
| PRINTS |
TF_T-box (IPR001699) - T[53-77] 3.7E-42 - T[118-131] 3.7E-42 - T[135-144] 3.7E-42 - T[154-168] 3.7E-42 - T[187-200] 3.7E-42 - T[208-216] 3.7E-42 |
| PRINTS |
TF_Brachyury (IPR002070) - T[98-118] 1.3E-20 - T[159-176] 1.3E-20 - T[212-222] 1.3E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 68.447 % | 294 | 1.4E-95 |
| TBX19_HUMAN | 55.39 % | 282 | 1.17E-90 |
| TBX6_HUMAN | 50 % | 193 | 1.14E-56 |