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  1. Transcript 'KH2012:KH.S164.4.v1....'

Transcript Model

Transcript Id

KH2012:KH.S164.4.v1.A.ND1-2

Possible name(s)

VPS18

Gene model

KH2012:KH.S164.4

Location

KhS164 [67,949 / 76,355]

Sequences

Amino acid sequence

Length: 659

>KH.S164.4.v1.A.ND1-2
SVPASNLEVMGSRLFAATIVRVSADNTNPFADNSGEVLNIVLTEFHLLLLYSDRLKVICS
LNEQLIFEDVYSSRYGQLRGLVKDPAQGTIWAYTDGAVFKYKVVKESRDVWQMYLDMGKF
DLAREHCRDNPANLDKVLTRQAEHEFSKGQYQESALYYAITQNCFEDVALKFLRAGKEVA
LRAYLQKKLSNLKAGETTQMTMLSTWLVSHLYPLYILKCVAFVCYVLLGDEIIIKSGTCL
SIYKRTKKKYDYERVVNHHIQNEDYTSALDALRKQNSVPLYYKFSPVLMQHIPQTTVNAW
IQLGRRIDPRHIIPSLVNCTERGSETHWMEAIRYLEYCTTELECSDPAIHNYLLSLYAKH
VPNSVISYLRGQGDDSSEICYDVKYALRLCLGNKDPSASETLHQACVHIYTVMALYEEAV
NMALKVDVELAKSIADRRELEEDEETRRKLWLCIAKHIVQEDKDIKRAMKFLQESGDLLK
IEDILPFFPDFVTIDHFKDALCESLAEYNKHIDQLKDEMNEATSSAHSIRANIQETRNRH
LVVGGTDRCQSCDKLLLTRAFYLFPCQHAFHNDCMWKDVRPLLIDSKRDLADRLQQKLLT
LNLSNDSTSKEERKTARQKLIKDLDETIANECVLCGEIAVRSIDTPFLDDTFGGEETWS

Nucleotide sequence

Length: 2,241

>KH2012:KH.S164.4.v1.A.ND1-2
TTAGCGTGCCTGCCTCTAACCTAGAGGTAATGGGTTCAAGGCTCTTCGCTGCTACCATTG
TGCGTGTTTCGGCTGACAATACAAATCCTTTTGCTGATAACAGTGGAGAAGTATTAAACA
TTGTCCTTACTGAGTTTCACTTGCTCCTGCTTTATTCTGATCGACTAAAAGTCATTTGTT
CTCTCAACGAACAACTTATATTTGAAGATGTATATAGTTCCAGGTATGGTCAACTGCGCG
GTTTGGTGAAGGACCCTGCTCAGGGCACAATATGGGCATATACCGATGGTGCTGTTTTTA
AGTATAAGGTTGTAAAAGAGTCTCGTGATGTGTGGCAAATGTATCTGGACATGGGAAAAT
TTGATCTGGCTCGTGAACACTGCAGAGACAACCCAGCTAATTTAGATAAAGTGCTGACAC
GACAAGCAGAGCATGAATTCAGCAAAGGTCAATACCAGGAAAGTGCTTTGTATTACGCAA
TTACACAAAACTGTTTTGAGGATGTGGCTTTAAAGTTCCTGAGAGCTGGAAAAGAAGTTG
CGTTGCGGGCTTATCTGCAGAAGAAACTAAGCAATTTAAAGGCAGGTGAAACAACTCAAA
TGACGATGTTATCAACGTGGCTTGTGTCCCATCTGTACCCACTCTATATTCTAAAATGTG
TTGCCTTCGTATGTTATGTACTACTAGGCGATGAAATAATCATTAAAAGTGGGACATGTT
TAAGTATATACAAACGAACAAAAAAAAAGTATGATTACGAGCGTGTAGTAAACCATCACA
TACAAAATGAGGATTATACATCAGCACTCGATGCACTGAGGAAACAAAACTCTGTTCCTT
TGTATTACAAGTTTTCACCAGTGCTAATGCAGCATATTCCCCAAACAACAGTGAACGCAT
GGATTCAATTAGGACGACGCATTGATCCAAGGCACATTATTCCATCCCTTGTTAATTGCA
CTGAGAGAGGTTCAGAAACACACTGGATGGAAGCAATTCGATATTTAGAGTATTGCACAA
CAGAATTGGAATGTAGCGATCCAGCAATTCATAATTATCTACTTTCACTCTACGCAAAAC
ACGTTCCGAATTCAGTAATCAGTTACCTCAGAGGACAGGGTGATGATTCCTCGGAGATAT
GTTACGACGTTAAATACGCACTGCGTCTCTGTCTCGGCAACAAAGATCCAAGTGCAAGTG
AGACGCTACATCAAGCTTGTGTTCATATTTACACTGTCATGGCTTTGTATGAAGAAGCGG
TTAACATGGCTTTAAAGGTTGACGTAGAACTTGCGAAGTCGATTGCTGATCGTCGTGAAT
TAGAAGAAGATGAAGAAACACGGAGGAAGTTGTGGCTCTGCATCGCGAAGCATATTGTGC
AGGAGGACAAGGACATTAAGAGAGCCATGAAGTTTTTACAGGAATCTGGTGACTTGTTGA
AAATTGAAGATATTCTTCCTTTCTTCCCTGATTTTGTGACAATTGATCATTTTAAAGATG
CGTTGTGTGAATCTTTAGCTGAATATAATAAACATATCGACCAGCTTAAAGATGAAATGA
ATGAAGCAACAAGCAGCGCTCATTCTATTCGTGCAAACATACAAGAAACAAGGAATCGTC
ACTTAGTAGTCGGGGGTACAGACAGATGTCAGTCATGTGACAAACTGCTTCTTACCAGAG
CTTTCTACTTGTTTCCATGTCAACATGCTTTCCATAATGATTGCATGTGGAAAGATGTGA
GGCCTCTTCTGATCGACTCAAAACGTGACTTGGCTGACAGACTTCAACAAAAACTACTGA
CACTTAATTTAAGCAACGATTCAACTTCCAAAGAGGAACGAAAAACTGCTCGTCAAAAAC
TTATCAAAGACCTTGACGAGACAATCGCGAATGAATGTGTGTTATGTGGTGAAATTGCCG
TGCGATCCATAGACACACCATTTCTGGATGACACATTTGGGGGAGAAGAAACTTGGTCAT
AAATGAAAAAGTAATAAAATCTCACGCTGTGTAAATCACCATAATTCTATGCTTTACAAT
GTACATGTACTGTATTGCAGTAATTTAATATTTCTTGTTTAATATTCATTCATATCACAG
CAAGTCTGAATTGGCATTGTTTCAATTTTTCATTGTTTTCAATGTAACTGATCGTGTGTT
TTGTTCTTGTGCAATAAATATCCTATTCAAATTACGAAGTGAACATGACATTTCATCAAG
ACAGCTTATCTAAAATATTTT

InterProScan

Pfam
Pep3_Vps18 (IPR007810) - T[32-146] 1.2E-40
Gene3D
TPR-like_helical_dom_sf (IPR011990) - T[237-539] 6.4E-8
ProSiteProfiles
Clathrin_H-chain/VPS_repeat (IPR000547) - T[304-467] 18.815
Pfam
VPS39/TGF_beta_rcpt-assoc_2 (IPR019453) - T[470-575] 3.4E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VPS18_HUMAN 44.411 % 548 0





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