- Transcript 'KH2012:KH.C1.396.v1....' >
- Transcript 'KH2012:KH.S215.4.v1....'
Transcript Model
Transcript Id
KH2012:KH.S215.4.v1.A.nonSL2-1
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
KhS215 [100,252 / 105,573]
Amino acid sequence
Length: 511
>KH.S215.4.v1.A.nonSL2-1
IPLLRTIDQFVTVNSTIKMILDTKALDELTNLPSPGNGMTSRIMTSRFHPYAKVSKTSGM
KSPTCGDSGAVVPPILASRPEVVGWQMEVETHVTEDYSDVLLVLSKIPKCTGCDHHIFDR
YILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSYVYCKEDFFKRFGTKCSGCELAIPPTQ
VVRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDYEHAKSRDLDMDNGIKR
PRTTITAKQLETLKIAYNQSPKPARHVREQLSSDTGLDMRVVQVWFQNRRAKEKRLKKDT
GRQRWGELFRSGAPSSGPHCRPNPDSPPSGGKRRVGGHSNRKRPSSSPGGTRIAIPIPSS
IQSPGRAPTNGQIESNFIAPEHNAPPHDGIMMGESPCFAPGEVPYPQQSSNHAYLSPGSI
PDMGGFPNLTRNYDYVDGPQILGPGMAPIMKPPTNNAIPNYYVTSPQMHHNQHQKNDCDV
ISESSGHSNLSDLSSSPRSWLGELDHVTHFQ
Nucleotide sequence
Length: 2,360
>KH2012:KH.S215.4.v1.A.nonSL2-1
TATTCCATTGTTAAGAACAATCGATCAATTTGTTACAGTTAATTCTACAATTAAAATGAT
TCTCGATACTAAAGCGCTCGATGAACTTACGAACCTGCCGTCGCCAGGTAACGGTATGAC
GTCAAGAATCATGACGTCGCGATTTCACCCGTACGCGAAAGTTTCGAAAACATCGGGTAT
GAAATCTCCCACCTGCGGGGATTCGGGGGCCGTTGTCCCGCCGATATTGGCTTCGCGACC
TGAGGTCGTCGGTTGGCAAATGGAAGTCGAAACGCACGTCACAGAAGATTATAGTGACGT
TTTGTTAGTTCTTTCCAAGATACCAAAATGCACCGGATGCGACCACCATATATTCGACCG
GTATATTCTCAAAGTACAGGACAAACCTTGGCATTCACAATGTTTAAAATGCAACGACTG
TGGGCGACAACTGACCGATAAATGTTTTTCTCGCGGTAGTTACGTTTACTGCAAGGAAGA
TTTCTTCAAGAGGTTCGGCACCAAATGCTCCGGTTGCGAACTCGCCATTCCCCCCACACA
AGTGGTTAGGAGGGCACAGGACAACGTGTACCATCTAGAATGCTTCAGATGTTTCATGTG
TAGTGAGCAATTGGGCACCGGGGACCAATTCTATTTGCTGGATGATAGTCGGCTTGTGTG
TAAGAAAGATTACGAACATGCAAAGTCAAGAGATCTTGACATGGACAACGGTATAAAGCG
ACCCCGCACCACTATCACAGCTAAGCAACTGGAAACACTGAAGATCGCTTACAATCAAAG
CCCGAAACCTGCTCGCCACGTGAGGGAGCAGCTGAGCTCGGACACCGGGTTAGACATGAG
AGTAGTTCAGGTATGGTTTCAAAACAGAAGGGCGAAAGAAAAACGTTTAAAGAAAGACAC
AGGCCGACAACGTTGGGGAGAGCTATTCCGATCAGGGGCGCCGTCTAGTGGCCCTCATTG
TCGACCAAACCCAGACTCCCCGCCCAGCGGTGGTAAGCGTCGTGTTGGTGGCCATAGCAA
CCGTAAGCGGCCCTCTAGCTCTCCTGGTGGCACACGTATAGCTATCCCGATACCATCGTC
GATTCAAAGCCCTGGTAGGGCGCCCACTAACGGACAAATTGAATCCAACTTTATTGCTCC
CGAGCACAATGCGCCACCTCACGACGGTATCATGATGGGTGAATCCCCTTGCTTTGCACC
TGGGGAAGTCCCGTACCCGCAACAATCTTCCAACCATGCTTATCTATCCCCTGGTAGTAT
TCCCGACATGGGGGGTTTCCCCAACCTGACACGAAACTACGATTACGTAGACGGCCCCCA
AATATTGGGACCAGGAATGGCGCCTATCATGAAACCCCCCACCAACAACGCGATACCGAA
TTATTACGTCACAAGCCCACAAATGCATCACAATCAACACCAGAAAAACGATTGTGACGT
CATATCCGAAAGTAGCGGTCACTCGAACCTGAGCGATCTATCTTCAAGTCCAAGGTCATG
GCTGGGTGAACTTGACCACGTGACACATTTCCAATAACTCGTTCCCCTAGAAAAGTTTTC
ACTGTGATTTCTATGCCGCCCGTACAATTATTAGGGTTGGGTTAATTATTATTGAAGGTA
TCCGCTATTGAGAAAATATCCAGAGTTTTTGACCCCAACTTCCCTTCTCCAACCTTCAAC
CCCCAATTTCTGACCTGTTACCCGTTACCTATTACCCCTAACTCCTATTCCTAACCCCAA
TTGCAAAGTTTCGCAATTCCGATGATTGAGACCAAATATTCGCGGTAATTTGACCCCGAA
ATATCTGGCAAAGTAACTTTCTTCTATGCACGCATGACTTTATTGCAAAACGGATTTTCT
TAAAGCGGGTGCGTTCTATGATATATATCTCGCTAAATTCTCGTCGTATTTGGGACTTTT
ACACCCCCATTAAAGTTACAATGGGTATTTATACAGATATCTACAAACTATTACGCATCC
ATCCCCGCTGTTAACCAATCAAATCGCTCTGTTATACGCTTCGGTGACAACGTATTTCTG
TAAGACGCATTATACGCCAATCAAGTCGCTTTAACCCCTAACTAACCGAAGCGAAACATA
GCGGTTTGATTGGTTGTAAAAGGGATGGTTGTGTAGTAGTCTGTATTTGAAAAACCCTTT
TAGTGAAGGTATATATGCCCACTATATATGACGCGTTTATCGTCGCCACATACCCGTATA
ACTACAGGGGGTTGTGTTATAGTTCCCTTCATTCCATCTCGCTTCAATCCGCCGCTAAAA
CGCACCCTGTGCCAAATTAATGCGGAACTGTGTTTCACCATGTTGCAATATTAGTTGTGT
GAGTACGCGAATAAATATTC
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[108-167] 14.256 - T[168-230] 11.494 |
| SMART |
Znf_LIM (IPR001781) - T[109-160] 1.6E-12 - T[168-223] 1.3E-16 |
| Pfam |
Znf_LIM (IPR001781) - T[110-165] 5.7E-13 - T[169-226] 5.2E-17 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[169-204] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[232-298] 3.46E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[236-296] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[238-300] 1.5E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[239-297] 2.4307E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[239-295] 7.7E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[271-294] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.561 % | 332 | 2.65E-110 |
| LHX3_HUMAN | 47.277 % | 333 | 1.04E-110 |
| LHX5_HUMAN | 42.8 % | 227 | 1.96E-69 |