- Region 'REG00001280' >
- Transcript 'KH2012:KH.C2.526.v2....' >
- Transcript 'KH2012:KH.L153.45.v1...' >
- Transcript 'KH2012:KH.L52.1.v1.A...' >
- Transcript 'KH2012:KH.S215.4.v1....'
Transcript Model
Transcript Id
KH2012:KH.S215.4.v1.R.nonSL4-1
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
KhS215 [100,232 / 105,573]
Amino acid sequence
Length: 518
>KH.S215.4.v1.R.nonSL4-1
PARRRDCIPLLRTIDQFVTVNSTIKMILDTKALDELTNLPSPGNGMTSRIMTSRFHPYAK
VSKTSGMKSPTCGDSGAVVPPILASRPEVVGWQMEVETHVTEDYSDVLLVLSKIPKCTGC
DHHIFDRYILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSYVYCKEDFFKRFGTKCSGCE
LAIPPTQVVRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDYEHAKSRDLD
MDNGIKRPRTTITAKQLETLKIAYNQSPKPARHVREQLSSDTGLDMRVVQVWFQNRRAKE
KRLKKDTGRQRWGELFRSGAPSSGPHCRPNPDSPPSGGKRRVGGHSNRKRPSSSPGGTRI
AIPIPSSIQSPGRAPTNGQIESNFIAPEHNAPPHDGIMMGESPCFAPGEVPYPQQSSNHA
YLSPGSIPDMGGFPNLTRNYDYVDGPQILGPGMAPIMKPPTNNAIPNYYVTSPQMHHNQH
QKNDCDVISESSGHSNLSDLSSSPRSWLGELDHVTHFQ
Nucleotide sequence
Length: 2,380
>KH2012:KH.S215.4.v1.R.nonSL4-1
CCTGCGCGACGTCGCGATTGTATTCCATTGTTAAGAACAATCGATCAATTTGTTACAGTT
AATTCTACAATTAAAATGATTCTCGATACTAAAGCGCTCGATGAACTTACGAACCTGCCG
TCGCCAGGTAACGGTATGACGTCAAGAATCATGACGTCGCGATTTCACCCGTACGCGAAA
GTTTCGAAAACATCGGGTATGAAATCTCCCACCTGCGGGGATTCGGGGGCCGTTGTCCCG
CCGATATTGGCTTCGCGACCTGAGGTCGTCGGTTGGCAAATGGAAGTCGAAACGCACGTC
ACAGAAGATTATAGTGACGTTTTGTTAGTTCTTTCCAAGATACCAAAATGCACCGGATGC
GACCACCATATATTCGACCGGTATATTCTCAAAGTACAGGACAAACCTTGGCATTCACAA
TGTTTAAAATGCAACGACTGTGGGCGACAACTGACCGATAAATGTTTTTCTCGCGGTAGT
TACGTTTACTGCAAGGAAGATTTCTTCAAGAGGTTCGGCACCAAATGCTCCGGTTGCGAA
CTCGCCATTCCCCCCACACAAGTGGTTAGGAGGGCACAGGACAACGTGTACCATCTAGAA
TGCTTCAGATGTTTCATGTGTAGTGAGCAATTGGGCACCGGGGACCAATTCTATTTGCTG
GATGATAGTCGGCTTGTGTGTAAGAAAGATTACGAACATGCAAAGTCAAGAGATCTTGAC
ATGGACAACGGTATAAAGCGACCCCGCACCACTATCACAGCTAAGCAACTGGAAACACTG
AAGATCGCTTACAATCAAAGCCCGAAACCTGCTCGCCACGTGAGGGAGCAGCTGAGCTCG
GACACCGGGTTAGACATGAGAGTAGTTCAGGTATGGTTTCAAAACAGAAGGGCGAAAGAA
AAACGTTTAAAGAAAGACACAGGCCGACAACGTTGGGGAGAGCTATTCCGATCAGGGGCG
CCGTCTAGTGGCCCTCATTGTCGACCAAACCCAGACTCCCCGCCCAGCGGTGGTAAGCGT
CGTGTTGGTGGCCATAGCAACCGTAAGCGGCCCTCTAGCTCTCCTGGTGGCACACGTATA
GCTATCCCGATACCATCGTCGATTCAAAGCCCTGGTAGGGCGCCCACTAACGGACAAATT
GAATCCAACTTTATTGCTCCCGAGCACAATGCGCCACCTCACGACGGTATCATGATGGGT
GAATCCCCTTGCTTTGCACCTGGGGAAGTCCCGTACCCGCAACAATCTTCCAACCATGCT
TATCTATCCCCTGGTAGTATTCCCGACATGGGGGGTTTCCCCAACCTGACACGAAACTAC
GATTACGTAGACGGCCCCCAAATATTGGGACCAGGAATGGCGCCTATCATGAAACCCCCC
ACCAACAACGCGATACCGAATTATTACGTCACAAGCCCACAAATGCATCACAATCAACAC
CAGAAAAACGATTGTGACGTCATATCCGAAAGTAGCGGTCACTCGAACCTGAGCGATCTA
TCTTCAAGTCCAAGGTCATGGCTGGGTGAACTTGACCACGTGACACATTTCCAATAACTC
GTTCCCCTAGAAAAGTTTTCACTGTGATTTCTATGCCGCCCGTACAATTATTAGGGTTGG
GTTAATTATTATTGAAGGTATCCGCTATTGAGAAAATATCCAGAGTTTTTGACCCCAACT
TCCCTTCTCCAACCTTCAACCCCCAATTTCTGACCTGTTACCCGTTACCTATTACCCCTA
ACTCCTATTCCTAACCCCAATTGCAAAGTTTCGCAATTCCGATGATTGAGACCAAATATT
CGCGGTAATTTGACCCCGAAATATCTGGCAAAGTAACTTTCTTCTATGCACGCATGACTT
TATTGCAAAACGGATTTTCTTAAAGCGGGTGCGTTCTATGATATATATCTCGCTAAATTC
TCGTCGTATTTGGGACTTTTACACCCCCATTAAAGTTACAATGGGTATTTATACAGATAT
CTACAAACTATTACGCATCCATCCCCGCTGTTAACCAATCAAATCGCTCTGTTATACGCT
TCGGTGACAACGTATTTCTGTAAGACGCATTATACGCCAATCAAGTCGCTTTAACCCCTA
ACTAACCGAAGCGAAACATAGCGGTTTGATTGGTTGTAAAAGGGATGGTTGTGTAGTAGT
CTGTATTTGAAAAACCCTTTTAGTGAAGGTATATATGCCCACTATATATGACGCGTTTAT
CGTCGCCACATACCCGTATAACTACAGGGGGTTGTGTTATAGTTCCCTTCATTCCATCTC
GCTTCAATCCGCCGCTAAAACGCACCCTGTGCCAAATTAATGCGGAACTGTGTTTCACCA
TGTTGCAATATTAGTTGTGTGAGTACGCGAATAAATATTC
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[115-174] 14.256 - T[175-237] 11.494 |
| SMART |
Znf_LIM (IPR001781) - T[116-167] 1.6E-12 - T[175-230] 1.3E-16 |
| Pfam |
Znf_LIM (IPR001781) - T[117-172] 5.8E-13 - T[176-233] 5.3E-17 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[176-211] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[239-305] 3.55E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[243-303] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[245-307] 1.5E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[246-302] 7.8E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[246-304] 3.25701E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[278-301] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.561 % | 332 | 5.54E-110 |
| LHX3_HUMAN | 47.277 % | 333 | 1.42E-110 |
| LHX5_HUMAN | 42.8 % | 227 | 3.14E-69 |