Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.S389.1.v2.B.SL6-1

Possible name(s)

NCL; RBM3; SART3

Gene model

KH2012:KH.S389.1

Location

KhS389 [66,900 / 72,293]

Sequences

Amino acid sequence

Length: 437

>KH.S389.1.v2.B.SL6-1
NVEMKKGKKSKKVAAEPEATNEENELLKQEVENEENDEKVVKTEDSDDEQEESADESSDD
DDSEEEEKVKPKVAKKESKSKAKKVVKESDEESDDDDDDSEEEEEEEKEDESDEESEDED
EDEDDDDNDDDDEENEEEVKLVKRKATETEEVATKKVKLDPSEVATLLFTELPEGLNDAV
FNKFLKSKEIKCVACRANYGRQKAYVDVRAEDKDAALQLHQVEWKGQEIQVTEAQSKAQD
RKGGDFASNRNDKDERTLFVKNLPYSADENAIAELFDGVKEVRLLTDRESGRPKGMAFIE
FDSTAEKETAFGLKDELEMDGRSLYLDNVTGGGGGGRGRGNRGGRGGFGRGGGGFGAGRG
RGGRGPSAPSKTLFVKGITEDMTRDTLYETFSGATDIRIPQDRDTGKNKFFAYVEYQSES
SATEVYKSSKGGMHVD+

Nucleotide sequence

Length: 1,308

>KH2012:KH.S389.1.v2.B.SL6-1
AACGTTGAAATGAAAAAGGGAAAGAAAAGCAAAAAAGTTGCCGCCGAACCTGAAGCAACA
AACGAAGAAAATGAATTACTGAAGCAAGAAGTTGAGAATGAGGAAAATGATGAAAAAGTT
GTAAAAACTGAAGACTCCGATGATGAGCAAGAGGAAAGTGCGGATGAAAGTTCTGATGAT
GACGATTCGGAAGAAGAAGAAAAAGTAAAGCCAAAAGTAGCAAAGAAAGAAAGTAAAAGT
AAGGCTAAAAAAGTTGTCAAAGAAAGTGATGAAGAATCTGATGATGATGATGATGATTCT
GAGGAGGAAGAAGAAGAAGAGAAAGAGGATGAGAGTGATGAGGAGAGTGAAGATGAAGAT
GAAGATGAAGACGACGACGACAATGATGATGATGATGAGGAAAATGAGGAAGAGGTGAAG
TTAGTCAAGCGGAAAGCAACTGAAACTGAAGAAGTTGCGACGAAGAAAGTCAAACTTGAT
CCATCAGAAGTTGCCACCTTACTTTTCACTGAGCTACCAGAGGGTCTGAATGACGCAGTT
TTCAACAAATTTTTAAAAAGTAAAGAAATTAAATGCGTTGCTTGCCGTGCAAACTATGGA
AGACAGAAAGCTTACGTTGATGTTCGGGCTGAAGATAAAGATGCGGCTCTTCAGCTCCAC
CAAGTGGAATGGAAGGGACAAGAGATTCAAGTAACAGAAGCTCAATCTAAAGCACAGGAT
AGAAAAGGTGGTGATTTTGCATCAAACCGAAACGATAAAGATGAAAGAACATTGTTTGTG
AAAAATCTTCCGTACAGTGCGGATGAGAATGCGATCGCCGAGCTTTTTGATGGAGTTAAA
GAAGTTCGTTTACTAACTGACAGGGAAAGTGGAAGACCTAAAGGAATGGCATTCATTGAG
TTTGATTCAACTGCTGAAAAAGAAACGGCTTTTGGTTTGAAAGATGAGCTGGAGATGGAC
GGAAGATCTTTGTATCTTGATAATGTTACTGGTGGTGGTGGTGGTGGAAGAGGTCGTGGT
AATCGAGGTGGAAGAGGAGGGTTTGGCCGTGGAGGTGGTGGATTTGGTGCTGGGAGAGGC
AGAGGGGGAAGAGGTCCATCTGCACCGAGCAAAACACTTTTTGTGAAGGGAATCACAGAG
GACATGACACGAGATACTTTGTATGAAACCTTCTCTGGTGCAACAGACATTCGTATTCCC
CAGGATCGAGACACTGGAAAAAATAAATTCTTTGCTTATGTTGAATATCAATCTGAGAGC
TCGGCAACAGAAGTTTATAAAAGTTCGAAAGGAGGTATGCATGTTGAT

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[183-251] 5.8E-20 - T[252-304] 5.8E-20 - T[305-324] 5.8E-20 - T[363-434] 4.0E-14
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[248-363] 1.05E-23 - T[335-428] 7.93E-16
ProSiteProfiles	RRM_dom (IPR000504) - T[256-331] 15.067 - T[371-436] 12.015
SMART	RRM_dom (IPR000504) - T[257-327] 1.7E-14 - T[372-436] 1.0E-9
Pfam	RRM_dom (IPR000504) - T[258-324] 2.2E-10 - T[373-427] 8.6E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NUCL_HUMAN	30.105 %	83.2	5.61E-17