- Molecular Tool 'cieg09c09-MO (Hamada's MO)' >
- Molecular Tool 'ciad41m18-MO' >
- Molecular Tool 'cieg08f06-MO (Hamada's MO)' >
- Molecular Tool 'ciad33i21-MO (Hamada's MO)' >
- Transcript 'KH2012:KH.S489.4.v1....'
Transcript Model
Transcript Id
KH2012:KH.S489.4.v1.B.ND1-1
Possible name(s)
COL12A1; COL14A1; MATN2
Gene model
Location
KhS489 [49,520 / 53,020]
Amino acid sequence
Length: 344
>KH.S489.4.v1.B.ND1-1
WTSPSPTCQRIVCTEQTKPANGSMSCNHGNNEGSVCSFECYSTHQLVGEFEIQCVTSQAG
TLPVWSGETPSCILRKNCGSFPTEPVDGYVVCTDGIFLDSECEFACEGFRTRVGALYTMC
VEDGGDMKWDNPTPVCERTQCPDQGSIANGTMSCTDGNYANSVCSYTCDNENYVLTPSGV
VDNTCNNDTTWNLPKPCCSKVCPPYSVVDAVILLDSSSSIGNENWRTMKAFIRQVIDSFV
IQDDAARLAIFRFNSQIDTRTQILLGDYPNDKQGLLRAFDRIPYDGEGTRTGAALNHARN
VMLAPANGNRDGVPDSVFIITDGVSQDHVTTAANLLREQGVEV+
Nucleotide sequence
Length: 1,031
>KH2012:KH.S489.4.v1.B.ND1-1
ATGGACGTCCCCTTCCCCCACATGCCAACGTATCGTATGCACAGAACAAACCAAACCGGC
CAACGGCAGCATGTCTTGTAACCATGGCAACAACGAAGGCAGTGTCTGCAGCTTTGAATG
TTACTCAACCCATCAACTGGTCGGCGAATTTGAAATACAATGCGTCACATCACAAGCTGG
AACATTGCCTGTTTGGTCCGGAGAGACGCCCAGCTGTATACTGAGGAAAAACTGCGGTAG
TTTCCCCACAGAGCCGGTTGATGGGTACGTGGTTTGCACAGATGGAATTTTCCTTGATTC
CGAATGTGAGTTCGCGTGTGAAGGGTTTCGAACTCGGGTGGGAGCTCTGTACACCATGTG
TGTTGAAGATGGCGGTGATATGAAATGGGACAACCCGACGCCCGTGTGCGAACGCACGCA
ATGTCCAGACCAAGGAAGCATCGCCAACGGTACAATGTCTTGTACGGATGGTAATTATGC
GAACTCAGTTTGTTCGTACACCTGCGACAACGAGAACTATGTGTTAACACCATCCGGGGT
GGTGGACAATACTTGCAATAATGATACGACTTGGAACCTCCCGAAGCCTTGCTGTTCTAA
GGTCTGTCCCCCATATTCGGTAGTGGACGCCGTCATCTTACTTGATTCGTCATCCTCCAT
TGGGAACGAGAACTGGAGGACAATGAAGGCATTCATTCGCCAAGTTATTGATTCATTCGT
GATCCAAGACGACGCGGCTCGCTTGGCAATCTTCCGCTTTAACTCCCAAATCGACACTCG
TACCCAAATACTACTTGGGGATTATCCTAATGATAAACAAGGACTGCTGAGAGCTTTTGA
TAGAATCCCGTATGACGGCGAAGGAACCCGAACAGGAGCTGCACTGAACCACGCTCGTAA
TGTGATGTTGGCACCCGCCAACGGGAACAGGGACGGAGTTCCTGATTCAGTGTTCATTAT
AACTGATGGCGTATCCCAGGACCACGTGACTACGGCAGCCAATCTTCTTCGAGAACAAGG
GGTTGAGGTTT
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[1-10] 5.827 - T[11-74] 7.36 - T[76-138] 7.101 - T[139-200] 8.272 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[11-79] 3.78E-11 - T[81-138] 7.09E-10 - T[140-203] 8.9E-9 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[13-72] 8.5E-7 - T[78-136] 0.079 - T[141-198] 0.2 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[13-72] 0.0019 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[13-73] 4.37869E-7 - T[80-137] 1.29815E-4 - T[141-198] 5.48808E-7 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[202-343] 4.6E-36 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[207-343] 7.3E-36 |
| SMART |
VWF_A (IPR002035) - T[207-343] 8.5E-10 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[209-343] 22.968 |
| Pfam |
VWF_A (IPR002035) - T[210-343] 2.6E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSMD1_HUMAN | 32.692 % | 81.3 | 1.01E-16 |
| COCA1_HUMAN | 37.778 % | 86.7 | 1.65E-18 |
| COEA1_HUMAN | 33.566 % | 82.4 | 4.54E-17 |